MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP088138 Location: 879535..890860 Organism: Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Replicon: chromosome
Accession: NZ_CP088138 Location: 879535..890860 Organism: Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM92_RS04270 (874981) | 874981..876079 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| LRM92_RS04275 (876089) | 876089..877606 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| LRM92_RS04280 (877682) | 877682..878227 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| LRM92_RS04285 (878492) | 878492..879250 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| LRM92_RS04295 (879535) | 879535..880341 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| LRM92_RS04300 (880616) | 880616..880867 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| LRM92_RS04305 (881044) | 881044..881271 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LRM92_RS04310 (881271) | 881271..881669 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LRM92_RS04315 (882475) | 882475..883011 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| LRM92_RS04320 (883058) | 883058..883690 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| LRM92_RS04325 (884409) | 884409..884993 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| LRM92_RS04330 (885113) | 885113..887602 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| LRM92_RS04335 (887643) | 887643..888386 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| LRM92_RS04340 (888383) | 888383..889459 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| LRM92_RS04345 (889603) | 889603..890115 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| LRM92_RS04350 (890102) | 890102..890860 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| LRM92_RS04355 (891070) | 891070..891942 | - | 873 | WP_000503681.1 | nickel/cobalt efflux protein RcnA | - |
| LRM92_RS04360 (892064) | 892064..892336 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| LRM92_RS04365 (892367) | 892367..893596 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| LRM92_RS04370 (893738) | 893738..894193 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| LRM92_RS04375 (894297) | 894297..895160 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |