MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP085987 Location: 4325888..4336468 Organism: Salmonella enterica strain SZL 38 Replicon: chromosome
Accession: NZ_CP085987 Location: 4325888..4336468 Organism: Salmonella enterica strain SZL 38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LKX03_RS21745 (4321822) | 4321822..4322277 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| LKX03_RS21750 (4322419) | 4322419..4323648 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| LKX03_RS21755 (4323679) | 4323679..4323951 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| LKX03_RS21760 (4324073) | 4324073..4324933 | + | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| LKX03_RS21765 (4325143) | 4325143..4325901 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| LKX03_RS21770 (4325888) | 4325888..4326400 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| LKX03_RS21775 (4326544) | 4326544..4327620 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| LKX03_RS21780 (4327617) | 4327617..4328360 | - | 744 | WP_000798504.1 | hypothetical protein | VF |
| LKX03_RS21785 (4328401) | 4328401..4330890 | - | 2490 | WP_000705483.1 | hypothetical protein | VF |
| LKX03_RS21790 (4331010) | 4331010..4331594 | - | 585 | WP_001244638.1 | hypothetical protein | VF |
| LKX03_RS21795 (4332313) | 4332313..4332945 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| LKX03_RS21800 (4332992) | 4332992..4333528 | - | 537 | WP_001038506.1 | hypothetical protein | VF |
| LKX03_RS21805 (4334334) | 4334334..4334732 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LKX03_RS21810 (4334732) | 4334732..4334959 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LKX03_RS21815 (4335136) | 4335136..4335387 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| LKX03_RS21820 (4335662) | 4335662..4336468 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| LKX03_RS21830 (4336753) | 4336753..4337511 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| LKX03_RS21835 (4337776) | 4337776..4338321 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| LKX03_RS21840 (4338397) | 4338397..4339914 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |