MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP085820 Location: 843865..854445 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle Replicon: chromosome
Accession: NZ_CP085820 Location: 843865..854445 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF64_RS03995 (839811) | 839811..840266 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| LJF64_RS04000 (840408) | 840408..841637 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| LJF64_RS04005 (841668) | 841668..841940 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| LJF64_RS04010 (842062) | 842062..842910 | + | 849 | WP_000503687.1 | nickel/cobalt efflux protein RcnA | - |
| LJF64_RS04015 (843120) | 843120..843878 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| LJF64_RS04020 (843865) | 843865..844377 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| LJF64_RS04025 (844521) | 844521..845597 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| LJF64_RS04030 (845594) | 845594..846337 | - | 744 | WP_000798504.1 | fimbrial biogenesis chaperone StdC | - |
| LJF64_RS04035 (846378) | 846378..848867 | - | 2490 | WP_000705483.1 | fimbrial outer membrane usher protein StdB | - |
| LJF64_RS04040 (848987) | 848987..849571 | - | 585 | WP_001244638.1 | fimbrial protein | - |
| LJF64_RS04045 (850290) | 850290..850922 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| LJF64_RS04050 (850969) | 850969..851505 | - | 537 | WP_001038506.1 | STM3031 family outer membrane protein | - |
| LJF64_RS04055 (852311) | 852311..852709 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LJF64_RS04060 (852709) | 852709..852936 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LJF64_RS04065 (853113) | 853113..853364 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| LJF64_RS04070 (853639) | 853639..854445 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| LJF64_RS04080 (854730) | 854730..855488 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| LJF64_RS04085 (855753) | 855753..856298 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| LJF64_RS04090 (856374) | 856374..857891 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |