MGE detailed information
MGE type: Genomic_island MGE length: 11330 bp
Accession: NZ_CP085819 Location: 2743062..2754391 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Replicon: chromosome
Accession: NZ_CP085819 Location: 2743062..2754391 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF65_RS12965 (2738508) | 2738508..2739606 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| LJF65_RS12970 (2739616) | 2739616..2741133 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| LJF65_RS12975 (2741209) | 2741209..2741754 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| LJF65_RS12980 (2742019) | 2742019..2742777 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| LJF65_RS12990 (2743062) | 2743062..2743868 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| LJF65_RS12995 (2744143) | 2744143..2744394 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| LJF65_RS13000 (2744571) | 2744571..2744798 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LJF65_RS13005 (2744798) | 2744798..2745196 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LJF65_RS13010 (2746002) | 2746002..2746538 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| LJF65_RS13015 (2746585) | 2746585..2747217 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| LJF65_RS13020 (2747936) | 2747936..2748520 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| LJF65_RS13025 (2748640) | 2748640..2751133 | + | 2494 | Protein_2526 | fimbrial outer membrane usher protein StdB | - |
| LJF65_RS13030 (2751174) | 2751174..2751917 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| LJF65_RS13035 (2751914) | 2751914..2752989 | + | 1076 | Protein_2528 | hypothetical protein | - |
| LJF65_RS13040 (2753134) | 2753134..2753646 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| LJF65_RS13045 (2753633) | 2753633..2754391 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| LJF65_RS13050 (2754601) | 2754601..2755449 | - | 849 | WP_000503687.1 | nickel/cobalt efflux protein RcnA | - |
| LJF65_RS13055 (2755573) | 2755573..2755845 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| LJF65_RS13060 (2755876) | 2755876..2757105 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| LJF65_RS13065 (2757247) | 2757247..2757702 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| LJF65_RS13070 (2757806) | 2757806..2758670 | + | 865 | Protein_2535 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |