MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP084207 Location: 1907475..1939355 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Accession: NZ_CP084207 Location: 1907475..1939355 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB15_RS09100 (1903659) | 1903659..1904927 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| LDB15_RS09105 (1904947) | 1904947..1905924 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| LDB15_RS09110 (1906260) | 1906260..1908512 | - | 2253 | Protein_1773 | alpha-amylase family glycosyl hydrolase | - |
| LDB15_RS09120 (1909898) | 1909898..1911271 | + | 1374 | Protein_1774 | DUF5507 domain-containing protein | - |
| LDB15_RS23305 (1911665) | 1911665..1911844 | + | 180 | WP_087676347.1 | DNA invertase | - |
| LDB15_RS09130 (1911999) | 1911999..1912118 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| LDB15_RS09135 (1912183) | 1912183..1916763 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| LDB15_RS09140 (1917127) | 1917127..1917456 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| LDB15_RS09145 (1917477) | 1917477..1917794 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| LDB15_RS09150 (1917832) | 1917832..1918032 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| LDB15_RS09155 (1918041) | 1918041..1918523 | - | 483 | WP_001407480.1 | RadC family protein | - |
| LDB15_RS09160 (1918532) | 1918532..1918990 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| LDB15_RS09165 (1919093) | 1919093..1919277 | - | 185 | Protein_1783 | DUF905 family protein | - |
| LDB15_RS09170 (1919888) | 1919888..1921591 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| LDB15_RS09175 (1921733) | 1921733..1922742 | + | 1010 | Protein_1785 | arsenic transporter | - |
| LDB15_RS09180 (1922755) | 1922755..1922907 | + | 153 | Protein_1786 | arsenate reductase | - |
| LDB15_RS09185 (1923294) | 1923294..1923761 | - | 468 | WP_000702495.1 | protein YfjT | - |
| LDB15_RS09190 (1923785) | 1923785..1924228 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| LDB15_RS09195 (1924228) | 1924228..1924464 | - | 237 | WP_001144029.1 | protein YpjK | - |
| LDB15_RS09200 (1924505) | 1924505..1925206 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| LDB15_RS09205 (1925423) | 1925423..1926244 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| LDB15_RS09210 (1926336) | 1926336..1927199 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| LDB15_RS09215 (1927554) | 1927554..1927925 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| LDB15_RS09220 (1927918) | 1927918..1928991 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| LDB15_RS09225 (1929133) | 1929133..1929396 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| LDB15_RS09230 (1929756) | 1929756..1931372 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| LDB15_RS09235 (1931369) | 1931369..1933558 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| LDB15_RS09240 (1933736) | 1933736..1934362 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| LDB15_RS09245 (1934515) | 1934515..1935924 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| LDB15_RS09250 (1936053) | 1936053..1936265 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| LDB15_RS09255 (1936309) | 1936309..1937265 | + | 957 | WP_000510827.1 | protein YfjH | - |
| LDB15_RS09260 (1937509) | 1937509..1938750 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| LDB15_RS09270 (1939531) | 1939531..1940013 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| LDB15_RS09275 (1940184) | 1940184..1940621 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| LDB15_RS09280 (1940611) | 1940611..1940901 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| LDB15_RS09285 (1940963) | 1940963..1941304 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| LDB15_RS09290 (1941453) | 1941453..1943114 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| LDB15_RS09295 (1943200) | 1943200..1944078 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |