MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP079992 Location: 2485630..2519091 Organism: Escherichia coli strain KMS2001 Replicon: chromosome
Accession: NZ_CP079992 Location: 2485630..2519091 Organism: Escherichia coli strain KMS2001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYK85_RS11985 (2482145) | 2482145..2482891 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| KYK85_RS11990 (2482980) | 2482980..2483666 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KYK85_RS11995 (2483843) | 2483843..2484046 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KYK85_RS12000 (2484081) | 2484081..2485541 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KYK85_RS12005 (2485630) | 2485630..2486997 | - | 1368 | Protein_2358 | MHS family MFS transporter | - |
| KYK85_RS12010 (2487518) | 2487518..2487631 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KYK85_RS12015 (2487700) | 2487700..2487933 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KYK85_RS12020 (2488250) | 2488250..2488840 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KYK85_RS12025 (2488938) | 2488938..2489513 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KYK85_RS12030 (2489513) | 2489513..2490475 | - | 963 | WP_001027733.1 | phage tail protein | - |
| KYK85_RS12035 (2490426) | 2490426..2490995 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KYK85_RS12040 (2491384) | 2491384..2491617 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KYK85_RS12045 (2491675) | 2491675..2492085 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KYK85_RS12050 (2492237) | 2492237..2492410 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KYK85_RS12055 (2492582) | 2492582..2492737 | - | 156 | WP_001309517.1 | protein YnfN | - |
| KYK85_RS12060 (2492816) | 2492816..2492881 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| KYK85_RS12065 (2492884) | 2492884..2493072 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| KYK85_RS12070 (2493083) | 2493083..2493295 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KYK85_RS12075 (2493658) | 2493658..2494155 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KYK85_RS12080 (2494152) | 2494152..2494685 | - | 534 | WP_001092971.1 | lysozyme | - |
| KYK85_RS12085 (2494682) | 2494682..2494993 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| KYK85_RS12090 (2494998) | 2494998..2495213 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KYK85_RS12095 (2495433) | 2495433..2495603 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KYK85_RS12100 (2495967) | 2495967..2496182 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KYK85_RS12105 (2496483) | 2496483..2496695 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KYK85_RS12110 (2496750) | 2496750..2496839 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| KYK85_RS12115 (2497117) | 2497117..2497869 | - | 753 | WP_001047135.1 | antitermination protein | - |
| KYK85_RS12120 (2497883) | 2497883..2498932 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| KYK85_RS12125 (2498934) | 2498934..2499212 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| KYK85_RS12130 (2499279) | 2499279..2499530 | - | 252 | WP_000980994.1 | protein Rem | - |
| KYK85_RS12135 (2499747) | 2499747..2499902 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KYK85_RS12140 (2499974) | 2499974..2500261 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KYK85_RS12145 (2500261) | 2500261..2500500 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KYK85_RS12150 (2500525) | 2500525..2500830 | + | 306 | WP_001326990.1 | protein YdfV | - |
| KYK85_RS12155 (2501033) | 2501033..2501365 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KYK85_RS12160 (2501802) | 2501802..2501951 | - | 150 | WP_011443592.1 | protein YdfW | - |
| KYK85_RS12165 (2501986) | 2501986..2502264 | - | 279 | Protein_2390 | protein YdfX | - |
| KYK85_RS12170 (2502248) | 2502248..2502478 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KYK85_RS12175 (2502562) | 2502562..2502969 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KYK85_RS12180 (2503136) | 2503136..2503291 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KYK85_RS22935 (2503293) | 2503293..2503421 | + | 129 | WP_000344964.1 | protein YdfB | - |
| KYK85_RS12185 (2503451) | 2503451..2503669 | + | 219 | WP_001171942.1 | protein YdfC | - |
| KYK85_RS12190 (2504237) | 2504237..2504425 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KYK85_RS12195 (2504422) | 2504422..2504613 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KYK85_RS12200 (2504706) | 2504706..2505473 | + | 768 | Protein_2398 | exonuclease | - |
| KYK85_RS12205 (2505470) | 2505470..2506165 | + | 696 | Protein_2399 | IS3 family transposase IS2 | Transposase |
| KYK85_RS12210 (2506179) | 2506179..2507336 | + | 1158 | Protein_2400 | Putative defective protein IntQ ; Integrase | Integrase |
| KYK85_RS12215 (2507524) | 2507524..2508543 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KYK85_RS12220 (2508555) | 2508555..2509769 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KYK85_RS12225 (2509975) | 2509975..2510301 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| KYK85_RS12230 (2510436) | 2510436..2510777 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KYK85_RS12235 (2510812) | 2510812..2511372 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KYK85_RS12240 (2511375) | 2511375..2512085 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KYK85_RS12245 (2512193) | 2512193..2512498 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| KYK85_RS12250 (2512697) | 2512697..2515123 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KYK85_RS12255 (2515184) | 2515184..2517607 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KYK85_RS12260 (2517618) | 2517618..2518235 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| KYK85_RS12265 (2518237) | 2518237..2519091 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| KYK85_RS12270 (2519134) | 2519134..2519748 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| KYK85_RS12275 (2519907) | 2519907..2521199 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| KYK85_RS12280 (2521152) | 2521152..2521847 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| KYK85_RS12285 (2521972) | 2521972..2523192 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |