MGE detailed information
MGE type: Genomic_island MGE length: 30940 bp
Accession: NZ_CP079736 Location: 1108906..1139845 Organism: Escherichia coli strain GB2005-delet-a-f Replicon: chromosome
Accession: NZ_CP079736 Location: 1108906..1139845 Organism: Escherichia coli strain GB2005-delet-a-f Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX13_RS05350 (1105090) | 1105090..1106358 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| KYX13_RS05355 (1106378) | 1106378..1107355 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| KYX13_RS05360 (1107691) | 1107691..1109943 | - | 2253 | Protein_1048 | alpha-amylase family glycosyl hydrolase | - |
| KYX13_RS05370 (1111329) | 1111329..1112702 | + | 1374 | Protein_1049 | DUF5507 domain-containing protein | - |
| KYX13_RS05375 (1113048) | 1113048..1113206 | + | 159 | Protein_1050 | recombinase family protein | - |
| KYX13_RS05380 (1113430) | 1113430..1113549 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| KYX13_RS05385 (1113614) | 1113614..1118194 | + | 4581 | WP_010723187.1 | hypothetical protein | VF |
| KYX13_RS05390 (1118558) | 1118558..1118887 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| KYX13_RS05395 (1118908) | 1118908..1119225 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| KYX13_RS05400 (1119263) | 1119263..1119463 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| KYX13_RS05405 (1119472) | 1119472..1119954 | - | 483 | WP_001407480.1 | RadC family protein | - |
| KYX13_RS05410 (1119963) | 1119963..1120421 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| KYX13_RS05415 (1120524) | 1120524..1120708 | - | 185 | Protein_1058 | DUF905 domain-containing protein | - |
| KYX13_RS05420 (1121319) | 1121319..1123022 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| KYX13_RS05425 (1123164) | 1123164..1124173 | + | 1010 | Protein_1060 | arsenic transporter | - |
| KYX13_RS22215 (1124186) | 1124186..1124338 | + | 153 | Protein_1061 | arsenate reductase | - |
| KYX13_RS05435 (1124725) | 1124725..1125192 | - | 468 | WP_000702495.1 | protein YfjT | - |
| KYX13_RS05440 (1125216) | 1125216..1125659 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| KYX13_RS05445 (1125659) | 1125659..1125895 | - | 237 | WP_001144029.1 | protein YpjK | - |
| KYX13_RS05450 (1125936) | 1125936..1126637 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| KYX13_RS05455 (1126854) | 1126854..1127675 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| KYX13_RS05460 (1127767) | 1127767..1128630 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| KYX13_RS05465 (1128985) | 1128985..1129356 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| KYX13_RS05470 (1129349) | 1129349..1130422 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| KYX13_RS05475 (1130564) | 1130564..1130827 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| KYX13_RS05480 (1131187) | 1131187..1132803 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| KYX13_RS05485 (1132800) | 1132800..1134989 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| KYX13_RS05490 (1135167) | 1135167..1135793 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| KYX13_RS05495 (1135946) | 1135946..1137355 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| KYX13_RS05500 (1137484) | 1137484..1137696 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| KYX13_RS05505 (1137740) | 1137740..1138696 | + | 957 | WP_000510827.1 | protein YfjH | - |
| KYX13_RS05510 (1138940) | 1138940..1139827 | - | 888 | Protein_1077 | hypothetical protein ; Integrase | Integrase |
| KYX13_RS05515 (1139827) | 1139827..1140486 | - | 660 | WP_219161781.1 | type A chloramphenicol O-acetyltransferase | - |
| KYX13_RS05525 (1141228) | 1141228..1141710 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| KYX13_RS05530 (1141881) | 1141881..1142318 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| KYX13_RS05535 (1142308) | 1142308..1142598 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| KYX13_RS05540 (1142660) | 1142660..1143001 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| KYX13_RS05545 (1143150) | 1143150..1144811 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |