MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 72349 bp
Accession: NZ_CP078140 Location: 1..72349 Organism: Pseudomonas savastanoi pv. savastanoi strain PVFi1 Replicon: plasmid pPsv_PVFi1
Accession: NZ_CP078140 Location: 1..72349 Organism: Pseudomonas savastanoi pv. savastanoi strain PVFi1 Replicon: plasmid pPsv_PVFi1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ966_RS28440 (HQ966_28240) | 1..1314 | + | 1314 | WP_237901250.1 | replication initiation protein | - |
| HQ966_RS28445 (HQ966_28245) | 1541..1855 | + | 315 | WP_031598871.1 | HU family DNA-binding protein | - |
| HQ966_RS28450 (HQ966_28250) | 2272..3480 | - | 1209 | WP_237901251.1 | IS91 family transposase IS801 | Transposase |
| HQ966_RS28455 (HQ966_28255) | 3482..3763 | - | 282 | WP_031599130.1 | hypothetical protein | - |
| HQ966_RS28460 (HQ966_28260) | 3855..4859 | - | 1005 | WP_031598944.1 | ParB/RepB/Spo0J family partition protein | - |
| HQ966_RS28465 (HQ966_28265) | 4960..6087 | - | 1128 | WP_002556061.1 | ParA family protein | - |
| HQ966_RS28470 (HQ966_28270) | 6571..7119 | - | 549 | WP_024668572.1 | hypothetical protein | - |
| HQ966_RS28475 (HQ966_28275) | 7275..7844 | + | 570 | WP_080719068.1 | SOS response-associated peptidase family protein | - |
| HQ966_RS28480 (HQ966_28280) | 7867..8211 | - | 345 | Protein_8 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| HQ966_RS28485 (HQ966_28285) | 8393..9388 | - | 996 | Protein_9 | IS91 family transposase IS801 | Transposase |
| HQ966_RS28490 (HQ966_28290) | 9465..11020 | + | 1556 | WP_237901252.1 | IS3 family transposase IS1240 | Transposase |
| HQ966_RS28495 (HQ966_28295) | 11058..11294 | - | 237 | Protein_11 | transposase zinc-binding domain-containing protein | - |
| HQ966_RS28500 (HQ966_28300) | 11382..19664 | - | 8283 | Protein_12 | type III effector protein XopAD | - |
| HQ966_RS28505 (HQ966_28305) | 20179..20811 | - | 633 | WP_015060648.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HQ966_RS28510 (HQ966_28310) | 20852..21271 | - | 420 | WP_031599341.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HQ966_RS28515 (HQ966_28315) | 21268..21525 | - | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| HQ966_RS28520 (HQ966_28320) | 21838..22062 | + | 225 | WP_015060676.1 | antitoxin MazE family protein | Antitoxin Detail |
| HQ966_RS28525 (HQ966_28325) | 22059..22385 | + | 327 | WP_003319696.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| HQ966_RS28530 | 22597..23187 | - | 591 | WP_230851525.1 | protein-tyrosine phosphatase family protein | - |
| HQ966_RS28535 | 23479..23997 | - | 519 | Protein_19 | restriction endonuclease | - |
| HQ966_RS28540 (HQ966_28335) | 24202..25377 | + | 1176 | WP_237901253.1 | IS91 family transposase IS801 | Transposase |
| HQ966_RS28545 (HQ966_28340) | 25717..25890 | + | 174 | WP_005759896.1 | hypothetical protein | - |
| HQ966_RS28550 (HQ966_28345) | 25890..26495 | + | 606 | WP_005759898.1 | hypothetical protein | - |
| HQ966_RS28555 (HQ966_28350) | 26578..27210 | - | 633 | WP_237901254.1 | hypothetical protein | - |
| HQ966_RS28560 (HQ966_28355) | 27207..27437 | - | 231 | WP_058886566.1 | hypothetical protein | - |
| HQ966_RS28565 (HQ966_28360) | 27473..27889 | - | 417 | WP_005619498.1 | hypothetical protein | - |
| HQ966_RS28570 (HQ966_28365) | 28053..28667 | - | 615 | Protein_26 | primase C-terminal domain-containing protein | - |
| HQ966_RS28575 (HQ966_28370) | 29042..30250 | + | 1209 | WP_237901160.1 | IS91 family transposase IS801 | Transposase |
| HQ966_RS28580 (HQ966_28375) | 30423..30653 | - | 231 | WP_237901255.1 | hypothetical protein | - |
| HQ966_RS28585 (HQ966_28380) | 30701..31075 | + | 375 | WP_044311047.1 | hypothetical protein | - |
| HQ966_RS28590 (HQ966_28385) | 31175..31558 | - | 384 | Protein_30 | IS5 family transposase ISPre1 | Transposase |
| HQ966_RS28595 (HQ966_28390) | 31667..33340 | + | 1674 | WP_015060867.1 | radical SAM protein | - |
| HQ966_RS28600 (HQ966_28395) | 33414..33737 | + | 324 | WP_237901256.1 | NUDIX domain-containing protein | - |
| HQ966_RS28605 (HQ966_28400) | 34028..34605 | + | 578 | Protein_33 | IS3 family transposase IS1240 | Transposase |
| HQ966_RS28610 (HQ966_28405) | 34657..35879 | + | 1223 | WP_095178853.1 | IS3 family transposase IS51 | Transposase |
| HQ966_RS28615 (HQ966_28410) | 35967..36494 | - | 528 | WP_044320037.1 | hypothetical protein | - |
| HQ966_RS28620 (HQ966_28415) | 36634..36927 | - | 294 | WP_044424159.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HQ966_RS28625 (HQ966_28420) | 36927..37112 | - | 186 | WP_080719061.1 | stability determinant | Antitoxin Detail |
| HQ966_RS28630 (HQ966_28425) | 37318..37797 | - | 480 | WP_031598957.1 | DUF4411 family protein | - |
| HQ966_RS28635 (HQ966_28430) | 37784..38932 | - | 1149 | WP_031598959.1 | XRE family transcriptional regulator | - |
| HQ966_RS28640 (HQ966_28435) | 39198..39512 | - | 315 | WP_031598871.1 | HU family DNA-binding protein | - |
| HQ966_RS28645 (HQ966_28440) | 39739..41052 | - | 1314 | WP_237901247.1 | replication initiation protein | - |
| HQ966_RS28650 (HQ966_28445) | 41451..41678 | - | 228 | WP_031598867.1 | hypothetical protein | - |
| HQ966_RS28655 (HQ966_28450) | 41757..42185 | - | 429 | WP_031598865.1 | GntR family transcriptional regulator | - |
| HQ966_RS28660 (HQ966_28455) | 42317..42454 | - | 138 | WP_162837005.1 | hypothetical protein | - |
| HQ966_RS28665 (HQ966_28460) | 42531..42701 | - | 171 | WP_004667949.1 | hypothetical protein | - |
| HQ966_RS28670 (HQ966_28465) | 42913..43914 | - | 1002 | WP_050512947.1 | HNH endonuclease signature motif containing protein | - |
| HQ966_RS28675 (HQ966_28470) | 44347..44517 | - | 171 | WP_162837004.1 | hypothetical protein | - |
| HQ966_RS28680 (HQ966_28475) | 44651..46660 | - | 2010 | WP_144002113.1 | hypothetical protein | Relaxase |
| HQ966_RS28685 (HQ966_28480) | 46975..47394 | - | 420 | WP_004667944.1 | hypothetical protein | Relaxase |
| HQ966_RS28690 (HQ966_28485) | 47405..47890 | + | 486 | WP_144002111.1 | hypothetical protein | Relaxase |
| HQ966_RS28695 (HQ966_28490) | 48381..48638 | - | 258 | WP_237901248.1 | hypothetical protein | Relaxase |
| HQ966_RS28700 (HQ966_28495) | 48705..49927 | + | 1223 | WP_095178853.1 | IS3 family transposase IS51 | Transposase |
| HQ966_RS28705 (HQ966_28500) | 49967..50035 | - | 69 | Protein_53 | HU family DNA-binding protein | - |
| HQ966_RS28710 | 50261..50440 | - | 180 | Protein_54 | replication protein A | - |
| HQ966_RS28715 (HQ966_28505) | 50459..51094 | + | 636 | WP_031598774.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| HQ966_RS28720 (HQ966_28510) | 51177..51455 | + | 279 | WP_057446745.1 | hypothetical protein | - |
| HQ966_RS28725 (HQ966_28515) | 51424..53421 | - | 1998 | WP_230851552.1 | putative signaling protein | VF |
| HQ966_RS28730 (HQ966_28520) | 53736..53987 | + | 252 | WP_031599138.1 | antitoxin | - |
| HQ966_RS28735 (HQ966_28525) | 53984..54295 | + | 312 | WP_031599141.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HQ966_RS28740 (HQ966_28530) | 54353..54607 | - | 255 | WP_010208566.1 | hypothetical protein | - |
| HQ966_RS28745 (HQ966_28535) | 54692..54967 | + | 276 | Protein_61 | Tn3 family transposase TnpA_ISThsp9 | Transposase |
| HQ966_RS28750 (HQ966_28540) | 54976..55146 | + | 171 | Protein_62 | Tn3 family transposase TnpA_ISThsp9 | Transposase |
| HQ966_RS28755 (HQ966_28545) | 55457..56491 | + | 1035 | WP_015060660.1 | IS110 family transposase ISPsy16 | Transposase |
| HQ966_RS28760 (HQ966_28550) | 56868..57026 | + | 159 | WP_237901257.1 | MobA/MobL family protein | - |
| HQ966_RS28765 (HQ966_28555) | 57023..57268 | - | 246 | WP_237901249.1 | hypothetical protein | - |
| HQ966_RS28775 (HQ966_28565) | 58623..58844 | - | 222 | WP_235208930.1 | hypothetical protein | - |
| HQ966_RS28780 (HQ966_28570) | 59010..59438 | - | 429 | WP_054082441.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| HQ966_RS28785 (HQ966_28575) | 59470..59625 | - | 156 | WP_080719041.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| HQ966_RS28790 (HQ966_28580) | 60113..60586 | + | 474 | WP_074800939.1 | DUF3757 domain-containing protein | - |
| HQ966_RS28795 (HQ966_28585) | 60840..61139 | + | 300 | WP_160188679.1 | FCD domain-containing protein | - |
| HQ966_RS28800 (HQ966_28590) | 61174..61962 | + | 789 | WP_002556064.1 | L-cystine import ATP-binding protein TcyC | VF |
| HQ966_RS28805 (HQ966_28595) | 61984..62898 | + | 915 | WP_002556065.1 | aminotransferase class IV | - |
| HQ966_RS28810 (HQ966_28600) | 62925..63761 | + | 837 | WP_031598553.1 | transporter substrate-binding domain-containing protein | - |
| HQ966_RS28815 (HQ966_28605) | 63826..64488 | + | 663 | WP_031598554.1 | amino acid ABC transporter permease | - |
| HQ966_RS28820 (HQ966_28610) | 64500..65165 | + | 666 | WP_031598555.1 | amino acid ABC transporter permease | - |
| HQ966_RS28825 (HQ966_28615) | 65180..65578 | + | 399 | WP_141232798.1 | chloride channel protein | - |
| HQ966_RS28830 (HQ966_28620) | 65985..67193 | - | 1209 | WP_237901160.1 | IS91 family transposase IS801 | Transposase |
| HQ966_RS28835 (HQ966_28625) | 68000..69034 | + | 1035 | WP_015060660.1 | IS110 family transposase ISPsy16 | Transposase |
| HQ966_RS28840 (HQ966_28630) | 69332..69868 | - | 537 | WP_235208929.1 | hypothetical protein | Relaxase |
| HQ966_RS28845 (HQ966_28635) | 70091..70363 | - | 273 | WP_031599249.1 | hypothetical protein | - |
| HQ966_RS28850 (HQ966_28640) | 70592..70939 | + | 348 | Protein_82 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| HQ966_RS28855 (HQ966_28645) | 71156..71584 | + | 429 | WP_002556024.1 | GntR family transcriptional regulator | - |
| HQ966_RS28860 (HQ966_28650) | 71804..72001 | + | 198 | WP_010209245.1 | ribbon-helix-helix protein, CopG family | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|