MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP077668 Location: 880832..892157 Organism: Salmonella enterica strain SP Replicon: chromosome
Accession: NZ_CP077668 Location: 880832..892157 Organism: Salmonella enterica strain SP Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTP12_RS04265 (876278) | 876278..877376 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| KTP12_RS04270 (877386) | 877386..878903 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| KTP12_RS04275 (878979) | 878979..879524 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| KTP12_RS04280 (879789) | 879789..880547 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| KTP12_RS04290 (880832) | 880832..881638 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| KTP12_RS04295 (881913) | 881913..882164 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| KTP12_RS04300 (882341) | 882341..882568 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| KTP12_RS04305 (882568) | 882568..882966 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| KTP12_RS04310 (883772) | 883772..884308 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| KTP12_RS04315 (884355) | 884355..884987 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| KTP12_RS04320 (885706) | 885706..886290 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| KTP12_RS04325 (886410) | 886410..888899 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| KTP12_RS04330 (888940) | 888940..889683 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| KTP12_RS04335 (889680) | 889680..890756 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| KTP12_RS04340 (890900) | 890900..891412 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| KTP12_RS04345 (891399) | 891399..892157 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| KTP12_RS04350 (892367) | 892367..893251 | - | 885 | WP_000503677.1 | nickel/cobalt efflux protein RcnA | - |
| KTP12_RS04355 (893373) | 893373..893645 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| KTP12_RS04360 (893676) | 893676..894905 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| KTP12_RS04365 (895047) | 895047..895502 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| KTP12_RS04370 (895606) | 895606..896469 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.001 |