MGE detailed information
MGE type: Conjugative plasmid MGE length: 88902 bp
Accession: NZ_CP077292 Location: 1..88902 Organism: Citrobacter farmeri strain FDAARGOS 1423 Replicon: plasmid unnamed
Accession: NZ_CP077292 Location: 1..88902 Organism: Citrobacter farmeri strain FDAARGOS 1423 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L53_RS23685 | 464..688 | - | 225 | WP_232231116.1 | antirestriction protein | - |
| I6L53_RS23050 (I6L53_23050) | 1061..1891 | - | 831 | WP_042325702.1 | N-6 DNA methylase | - |
| I6L53_RS23055 (I6L53_23055) | 1935..2147 | - | 213 | WP_198034320.1 | hypothetical protein | - |
| I6L53_RS23060 (I6L53_23060) | 2284..2628 | - | 345 | WP_042325707.1 | hypothetical protein | - |
| I6L53_RS23065 (I6L53_23065) | 2685..3089 | - | 405 | WP_042325709.1 | hypothetical protein | - |
| I6L53_RS23070 (I6L53_23070) | 3744..4022 | - | 279 | WP_032697855.1 | helix-turn-helix transcriptional regulator | - |
| I6L53_RS23075 (I6L53_23075) | 4012..4332 | - | 321 | WP_042325715.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| I6L53_RS23080 (I6L53_23080) | 4487..4690 | - | 204 | WP_072015779.1 | hypothetical protein | - |
| I6L53_RS23085 (I6L53_23085) | 4767..5111 | - | 345 | WP_042325717.1 | hypothetical protein | - |
| I6L53_RS23090 (I6L53_23090) | 5108..5836 | - | 729 | WP_042325719.1 | plasmid SOS inhibition protein A | - |
| I6L53_RS23095 (I6L53_23095) | 5833..6267 | - | 435 | WP_084196681.1 | conjugation system SOS inhibitor PsiB | - |
| I6L53_RS23100 (I6L53_23100) | 6308..8341 | - | 2034 | WP_042325723.1 | ParB/RepB/Spo0J family partition protein | - |
| I6L53_RS23105 (I6L53_23105) | 8412..8654 | - | 243 | WP_015062663.1 | DUF905 domain-containing protein | - |
| I6L53_RS23110 (I6L53_23110) | 8707..9264 | - | 558 | WP_042325725.1 | single-stranded DNA-binding protein | - |
| I6L53_RS23705 | 9696..9830 | - | 135 | WP_269546765.1 | hypothetical protein | - |
| I6L53_RS23115 (I6L53_23115) | 9972..10289 | - | 318 | WP_042325727.1 | hypothetical protein | - |
| I6L53_RS23120 (I6L53_23120) | 10324..10578 | - | 255 | WP_198034318.1 | DNA polymerase III subunit theta | - |
| I6L53_RS23125 (I6L53_23125) | 10771..10962 | - | 192 | WP_042325731.1 | hypothetical protein | - |
| I6L53_RS23130 (I6L53_23130) | 11005..11511 | - | 507 | WP_042325733.1 | antirestriction protein ArdA | - |
| I6L53_RS23135 (I6L53_23135) | 11918..12697 | - | 780 | WP_042325735.1 | hypothetical protein | - |
| I6L53_RS23140 (I6L53_23140) | 12751..13170 | - | 420 | WP_042325737.1 | DUF1380 family protein | - |
| I6L53_RS23145 (I6L53_23145) | 13180..13401 | - | 222 | WP_042325739.1 | hypothetical protein | - |
| I6L53_RS23150 (I6L53_23150) | 13401..14078 | - | 678 | WP_042325740.1 | DNA methylase | - |
| I6L53_RS23155 (I6L53_23155) | 14581..14781 | + | 201 | WP_042325742.1 | hypothetical protein | - |
| I6L53_RS23160 (I6L53_23160) | 14971..15822 | + | 852 | WP_042325744.1 | hypothetical protein | VF |
| I6L53_RS23165 (I6L53_23165) | 15823..16116 | + | 294 | WP_077958145.1 | hypothetical protein | - |
| I6L53_RS23170 (I6L53_23170) | 16171..16359 | + | 189 | WP_042325747.1 | hypothetical protein | - |
| I6L53_RS23175 (I6L53_23175) | 17103..17498 | + | 396 | WP_052425434.1 | hypothetical protein | - |
| I6L53_RS23180 (I6L53_23180) | 17584..18287 | + | 704 | Protein_29 | IS91 family transposase ISMno23 | Transposase |
| I6L53_RS23185 (I6L53_23185) | 18446..18700 | + | 255 | WP_042325750.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| I6L53_RS23190 (I6L53_23190) | 18690..18980 | + | 291 | WP_000143805.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| I6L53_RS23195 (I6L53_23195) | 19043..19306 | + | 264 | WP_042325752.1 | hypothetical protein | - |
| I6L53_RS23200 (I6L53_23200) | 19387..19584 | + | 198 | WP_042325754.1 | hypothetical protein | - |
| I6L53_RS23205 (I6L53_23205) | 19665..19835 | + | 171 | WP_156970478.1 | hypothetical protein | - |
| I6L53_RS23210 (I6L53_23210) | 20340..20687 | - | 348 | WP_042325758.1 | IS66 family transposase ISKpn24 | Transposase |
| I6L53_RS23220 (I6L53_23220) | 21409..24978 | - | 3570 | WP_232231117.1 | AIDA-I autotransporter | VF |
| I6L53_RS23225 (I6L53_23225) | 26821..27351 | - | 531 | WP_042325762.1 | GNAT family N-acetyltransferase | Toxin Detail |
| I6L53_RS23230 (I6L53_23230) | 27355..27624 | - | 270 | WP_001275015.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| I6L53_RS23235 (I6L53_23235) | 28484..29473 | + | 990 | WP_084196684.1 | RepB family plasmid replication initiator protein | - |
| I6L53_RS23240 (I6L53_23240) | 29761..30501 | - | 741 | WP_042325766.1 | tyrosine-type recombinase/integrase | - |
| I6L53_RS23690 | 30658..30744 | - | 87 | Protein_41 | hypothetical protein | - |
| I6L53_RS23245 (I6L53_23245) | 30865..31158 | - | 294 | WP_042325767.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| I6L53_RS23250 (I6L53_23250) | 31145..31411 | - | 267 | WP_042325769.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| I6L53_RS23255 (I6L53_23255) | 32104..32235 | - | 132 | Protein_44 | type II toxin-antitoxin system ParD family antitoxin | - |
| I6L53_RS23260 (I6L53_23260) | 32326..32577 | - | 252 | WP_042325774.1 | hypothetical protein | - |
| I6L53_RS23265 (I6L53_23265) | 33032..33541 | - | 510 | WP_042325776.1 | hypothetical protein | - |
| I6L53_RS23270 (I6L53_23270) | 33797..34291 | - | 495 | WP_042325778.1 | FidL-like protein | - |
| I6L53_RS23275 (I6L53_23275) | 34288..35055 | - | 768 | WP_052425430.1 | winged helix-turn-helix domain-containing protein | - |
| I6L53_RS23280 (I6L53_23280) | 35436..36302 | + | 867 | Protein_49 | IS5 family transposase | - |
| I6L53_RS23285 (I6L53_23285) | 36478..36798 | + | 321 | WP_042325782.1 | DUF134 domain-containing protein | - |
| I6L53_RS23290 (I6L53_23290) | 36773..37225 | + | 453 | WP_072015782.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| I6L53_RS23295 (I6L53_23295) | 37677..38138 | - | 462 | WP_042325783.1 | conjugation system SOS inhibitor PsiB | - |
| I6L53_RS23300 (I6L53_23300) | 39216..39782 | + | 567 | WP_156970479.1 | hypothetical protein | - |
| I6L53_RS23305 (I6L53_23305) | 39880..40419 | + | 540 | WP_042325785.1 | hypothetical protein | - |
| I6L53_RS23310 (I6L53_23310) | 40720..41334 | + | 615 | WP_042325787.1 | Major fimbrial subunit SMF-1 | VF |
| I6L53_RS23315 (I6L53_23315) | 41436..44021 | + | 2586 | WP_042325789.1 | Outer membrane usher protein YraJ | VF |
| I6L53_RS23320 (I6L53_23320) | 44060..44791 | + | 732 | WP_042325791.1 | putative fimbrial chaperone LpfB | VF |
| I6L53_RS23325 (I6L53_23325) | 44788..46098 | + | 1311 | WP_042325793.1 | fimbrial protein | - |
| I6L53_RS23330 (I6L53_23330) | 46174..46755 | + | 582 | WP_042325795.1 | hypothetical protein | - |
| I6L53_RS23335 (I6L53_23335) | 47321..47563 | + | 243 | WP_156970480.1 | hypothetical protein | - |
| I6L53_RS23340 (I6L53_23340) | 47880..48053 | + | 174 | WP_042325800.1 | YhfL family protein | - |
| I6L53_RS23345 (I6L53_23345) | 48130..48561 | - | 432 | Protein_62 | IS200-IS605 family transposase IS609 | Transposase |
| I6L53_RS23350 (I6L53_23350) | 48896..49252 | - | 357 | WP_052425431.1 | FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein | - |
| I6L53_RS23355 (I6L53_23355) | 49457..49675 | + | 219 | WP_042325802.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| I6L53_RS23360 (I6L53_23360) | 49677..49982 | + | 306 | WP_042325804.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| I6L53_RS23365 (I6L53_23365) | 50166..50357 | - | 192 | WP_042325806.1 | hypothetical protein | - |
| I6L53_RS23370 (I6L53_23370) | 50681..51031 | - | 351 | Protein_67 | hypothetical protein | - |
| I6L53_RS23375 (I6L53_23375) | 51733..52314 | + | 582 | WP_042325807.1 | hypothetical protein | - |
| I6L53_RS23380 (I6L53_23380) | 52467..53498 | + | 1032 | WP_042325809.1 | Abi family protein | - |
| I6L53_RS23385 (I6L53_23385) | 54700..55575 | - | 876 | WP_084196686.1 | incFII family plasmid replication initiator RepA | - |
| I6L53_RS23390 (I6L53_23390) | 55556..55633 | - | 78 | WP_042325874.1 | RepA leader peptide Tap | - |
| I6L53_RS23395 (I6L53_23395) | 55864..56121 | - | 258 | WP_042325812.1 | replication regulatory protein RepA | - |
| I6L53_RS23400 (I6L53_23400) | 56252..56815 | - | 564 | WP_042325815.1 | Phospholipase D | VF |
| I6L53_RS23405 (I6L53_23405) | 56998..57207 | - | 210 | Protein_74 | IS200/IS605 family transposase | - |
| I6L53_RS23410 (I6L53_23410) | 57167..57409 | - | 243 | WP_042325876.1 | hypothetical protein | - |
| I6L53_RS23415 (I6L53_23415) | 57451..58182 | - | 732 | WP_042325818.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| I6L53_RS23420 (I6L53_23420) | 58179..58745 | - | 567 | WP_042325820.1 | DUF2726 domain-containing protein | - |
| I6L53_RS23425 (I6L53_23425) | 58742..58987 | - | 246 | WP_042325822.1 | hypothetical protein | - |
| I6L53_RS23430 (I6L53_23430) | 58987..64284 | - | 5298 | WP_042325824.1 | Multifunctional conjugation protein TraI | Relaxase |
| I6L53_RS23435 (I6L53_23435) | 64284..66530 | - | 2247 | WP_042325827.1 | type IV conjugative transfer system coupling protein TraD | - |
| I6L53_RS23440 (I6L53_23440) | 66693..66971 | + | 279 | WP_042325829.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| I6L53_RS23445 (I6L53_23445) | 66962..67444 | + | 483 | WP_042325831.1 | GNAT family N-acetyltransferase | Toxin Detail |
| I6L53_RS23450 (I6L53_23450) | 67480..68217 | - | 738 | WP_042325833.1 | conjugal transfer complement resistance protein TraT | - |
| I6L53_RS23455 (I6L53_23455) | 68404..68964 | - | 561 | WP_042325835.1 | hypothetical protein | - |
| I6L53_RS23460 (I6L53_23460) | 68976..71873 | - | 2898 | WP_042325838.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| I6L53_RS23465 (I6L53_23465) | 71875..73236 | - | 1362 | WP_042325840.1 | conjugal transfer pilus assembly protein TraH | - |
| I6L53_RS23470 (I6L53_23470) | 73239..73847 | - | 609 | WP_042325843.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| I6L53_RS23475 (I6L53_23475) | 73872..74651 | - | 780 | WP_042325845.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| I6L53_RS23480 (I6L53_23480) | 74648..76465 | - | 1818 | WP_042325847.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| I6L53_RS23485 (I6L53_23485) | 76465..77085 | - | 621 | WP_042325848.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| I6L53_RS23490 (I6L53_23490) | 77096..78097 | - | 1002 | WP_042325849.1 | conjugal transfer pilus assembly protein TraU | - |
| I6L53_RS23495 (I6L53_23495) | 78090..78731 | - | 642 | WP_042325852.1 | type-F conjugative transfer system protein TraW | - |
| I6L53_RS23500 (I6L53_23500) | 78728..79189 | - | 462 | WP_042325853.1 | type-F conjugative transfer system protein TrbI | - |
| I6L53_RS23505 (I6L53_23505) | 79186..81777 | - | 2592 | WP_042325855.1 | type IV secretion system protein TraC | - |
| I6L53_RS23510 (I6L53_23510) | 81789..82403 | - | 615 | WP_042325878.1 | type IV conjugative transfer system lipoprotein TraV | - |
| I6L53_RS23515 (I6L53_23515) | 82306..82863 | - | 558 | WP_247751673.1 | hypothetical protein | - |
| I6L53_RS23520 (I6L53_23520) | 82866..83081 | - | 216 | WP_052425433.1 | hypothetical protein | - |
| I6L53_RS23525 (I6L53_23525) | 83085..83309 | - | 225 | WP_042325857.1 | TraR/DksA C4-type zinc finger protein | - |
| I6L53_RS23530 (I6L53_23530) | 83419..84780 | - | 1362 | WP_217124970.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| I6L53_RS23535 (I6L53_23535) | 84783..85508 | - | 726 | WP_042325689.1 | type-F conjugative transfer system secretin TraK | - |
| I6L53_RS23540 (I6L53_23540) | 85498..86061 | - | 564 | WP_042325691.1 | type IV conjugative transfer system protein TraE | - |
| I6L53_RS23545 (I6L53_23545) | 86081..86386 | - | 306 | WP_042325693.1 | type IV conjugative transfer system protein TraL | - |
| I6L53_RS23550 (I6L53_23550) | 86388..86747 | - | 360 | WP_042325695.1 | type IV conjugative transfer system pilin TraA | - |
| I6L53_RS23555 (I6L53_23555) | 86864..87097 | - | 234 | WP_000662610.1 | TraY domain-containing protein | - |
| I6L53_RS23560 (I6L53_23560) | 87303..87752 | - | 450 | WP_042325696.1 | helix-turn-helix domain-containing protein | - |
| I6L53_RS23565 (I6L53_23565) | 88049..88432 | - | 384 | WP_042325699.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|