MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 135905 bp
Accession: NZ_CP071844 Location: 1..135905 Organism: Vibrio sp. SCSIO 43009 Replicon: plasmid unnamed
Accession: NZ_CP071844 Location: 1..135905 Organism: Vibrio sp. SCSIO 43009 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4N43_RS23830 (J4N43_23705) | 3..776 | + | 774 | WP_054579117.1 | ParA family protein | - |
| J4N43_RS23835 (J4N43_23710) | 773..1690 | + | 918 | WP_054579118.1 | ParB/RepB/Spo0J family partition protein | - |
| J4N43_RS23840 (J4N43_23715) | 1714..2046 | - | 333 | WP_079878982.1 | hypothetical protein | - |
| J4N43_RS23845 (J4N43_23720) | 2141..3550 | - | 1410 | WP_054579120.1 | hypothetical protein | - |
| J4N43_RS24575 | 3616..3738 | - | 123 | WP_258457758.1 | hypothetical protein | - |
| J4N43_RS23850 (J4N43_23725) | 3821..4504 | - | 684 | WP_054577307.1 | hypothetical protein | - |
| J4N43_RS23855 (J4N43_23730) | 4573..9366 | - | 4794 | WP_252094221.1 | hypothetical protein | - |
| J4N43_RS23860 (J4N43_23735) | 9363..9989 | - | 627 | WP_017634054.1 | hypothetical protein | - |
| J4N43_RS23865 (J4N43_23740) | 9982..10395 | - | 414 | WP_136976912.1 | hypothetical protein | - |
| J4N43_RS23870 (J4N43_23745) | 10392..10715 | - | 324 | WP_017634052.1 | hypothetical protein | - |
| J4N43_RS23875 (J4N43_23750) | 11116..13743 | - | 2628 | WP_193837889.1 | hypothetical protein | - |
| J4N43_RS23880 (J4N43_23755) | 13838..14956 | - | 1119 | WP_054579125.1 | hypothetical protein | - |
| J4N43_RS23885 (J4N43_23760) | 15028..16287 | - | 1260 | WP_017634048.1 | hypothetical protein | - |
| J4N43_RS23890 (J4N43_23765) | 16287..16748 | - | 462 | WP_054579127.1 | hypothetical protein | - |
| J4N43_RS23895 (J4N43_23770) | 16805..17644 | - | 840 | WP_170894057.1 | hypothetical protein | - |
| J4N43_RS23900 (J4N43_23775) | 17760..19157 | - | 1398 | WP_054579129.1 | hypothetical protein | - |
| J4N43_RS23905 (J4N43_23780) | 19154..19501 | - | 348 | WP_033905435.1 | hypothetical protein | - |
| J4N43_RS23910 (J4N43_23785) | 19505..22162 | - | 2658 | WP_252094222.1 | hypothetical protein | - |
| J4N43_RS23915 (J4N43_23790) | 22291..23103 | - | 813 | WP_074190819.1 | hypothetical protein | - |
| J4N43_RS23920 (J4N43_23795) | 23103..23618 | - | 516 | WP_252094223.1 | hypothetical protein | - |
| J4N43_RS23925 | 23630..24190 | - | 561 | WP_252094224.1 | hypothetical protein | - |
| J4N43_RS23930 (J4N43_23805) | 24415..24702 | + | 288 | WP_252094225.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| J4N43_RS23935 (J4N43_23810) | 24801..25130 | + | 330 | WP_252094226.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| J4N43_RS23940 (J4N43_23815) | 25284..26621 | + | 1338 | WP_252094227.1 | Fic family protein | - |
| J4N43_RS23945 (J4N43_23820) | 26687..27184 | - | 498 | WP_042522736.1 | hypothetical protein | - |
| J4N43_RS23950 (J4N43_23825) | 27198..27806 | - | 609 | WP_252094228.1 | hypothetical protein | - |
| J4N43_RS23955 (J4N43_23830) | 27816..28484 | - | 669 | WP_171343314.1 | hypothetical protein | - |
| J4N43_RS23960 (J4N43_23835) | 28507..30081 | - | 1575 | WP_252094229.1 | hypothetical protein | - |
| J4N43_RS23965 (J4N43_23840) | 30074..30505 | - | 432 | WP_252094230.1 | DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein | - |
| J4N43_RS23970 (J4N43_23845) | 30552..32201 | - | 1650 | WP_252094231.1 | hypothetical protein | - |
| J4N43_RS23975 (J4N43_23850) | 32484..32834 | - | 351 | WP_053307364.1 | hypothetical protein | - |
| J4N43_RS23980 (J4N43_23855) | 32834..33385 | - | 552 | WP_104968928.1 | N-acetylmuramoyl-L-alanine amidase | - |
| J4N43_RS23985 (J4N43_23860) | 33623..33958 | - | 336 | WP_155484617.1 | hypothetical protein | - |
| J4N43_RS23990 (J4N43_23865) | 34009..34764 | - | 756 | WP_252094232.1 | hypothetical protein | - |
| J4N43_RS23995 (J4N43_23870) | 34774..35058 | - | 285 | WP_252094233.1 | PAAR domain-containing protein | - |
| J4N43_RS24000 (J4N43_23875) | 35065..35835 | - | 771 | WP_252094234.1 | hypothetical protein | VF |
| J4N43_RS24005 (J4N43_23880) | 35832..36809 | - | 978 | WP_054579151.1 | hypothetical protein | - |
| J4N43_RS24010 (J4N43_23885) | 36802..37563 | - | 762 | WP_171343305.1 | hypothetical protein | - |
| J4N43_RS24015 (J4N43_23890) | 37566..38105 | - | 540 | WP_054579153.1 | hypothetical protein | - |
| J4N43_RS24020 (J4N43_23895) | 38589..38852 | + | 264 | WP_250155004.1 | cupin domain-containing protein | - |
| J4N43_RS24025 (J4N43_23900) | 38933..39637 | - | 705 | WP_170897313.1 | nickel transporter | - |
| J4N43_RS24030 (J4N43_23905) | 39897..41981 | - | 2085 | WP_270007397.1 | TonB-dependent receptor | - |
| J4N43_RS24035 (J4N43_23910) | 42177..43496 | + | 1320 | WP_053306971.1 | hypothetical protein | VF |
| J4N43_RS24040 (J4N43_23915) | 43520..43714 | + | 195 | WP_017634326.1 | hypothetical protein | VF |
| J4N43_RS24045 (J4N43_23920) | 43850..44884 | + | 1035 | WP_140136440.1 | IS110 family transposase ISSod21 | Transposase |
| J4N43_RS24050 (J4N43_23925) | 45442..46476 | - | 1035 | WP_064377512.1 | IS110 family transposase ISAve1 | Transposase |
| J4N43_RS24055 (J4N43_23930) | 46589..47509 | + | 921 | WP_025594252.1 | IS5 family transposase ISVa2 | Transposase |
| J4N43_RS24060 (J4N43_23935) | 47810..48844 | - | 1035 | WP_140136440.1 | IS110 family transposase ISSod21 | Transposase |
| J4N43_RS24065 (J4N43_23940) | 49482..51152 | + | 1671 | WP_025594253.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit A | - |
| J4N43_RS24070 (J4N43_23945) | 51149..52474 | + | 1326 | WP_014257458.1 | glycerol-3-phosphate dehydrogenase subunit GlpB | - |
| J4N43_RS24075 (J4N43_23950) | 52471..53697 | + | 1227 | WP_004726856.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC | - |
| J4N43_RS24080 (J4N43_23955) | 53844..54317 | - | 474 | WP_025594143.1 | DUF4832 domain-containing protein | - |
| J4N43_RS24085 (J4N43_23960) | 54294..54707 | + | 414 | WP_025589760.1 | LysE family transporter | - |
| J4N43_RS24090 (J4N43_23965) | 54846..55013 | + | 168 | Protein_53 | IS481 family transposase | - |
| J4N43_RS24095 (J4N43_23970) | 55138..55809 | + | 672 | WP_033905380.1 | hypothetical protein | - |
| J4N43_RS24100 | 55837..56024 | - | 188 | Protein_55 | IS3 family transposase | - |
| J4N43_RS24105 (J4N43_23975) | 57191..57403 | + | 213 | WP_053307303.1 | cold-shock protein | - |
| J4N43_RS24110 (J4N43_23980) | 57846..58049 | + | 204 | WP_054579159.1 | hypothetical protein | - |
| J4N43_RS24115 (J4N43_23985) | 58841..59050 | - | 210 | WP_017634146.1 | hypothetical protein | - |
| J4N43_RS24120 (J4N43_23990) | 59211..60272 | - | 1062 | WP_252094235.1 | LacI family DNA-binding transcriptional regulator | - |
| J4N43_RS24125 (J4N43_23995) | 60504..62606 | + | 2103 | WP_252094236.1 | alpha-galactosidase | - |
| J4N43_RS24130 (J4N43_24000) | 62737..64458 | + | 1722 | WP_017634143.1 | solute:sodium symporter family transporter | - |
| J4N43_RS24135 (J4N43_24005) | 64587..65597 | + | 1011 | WP_053307373.1 | GDP-L-fucose synthase | VF |
| J4N43_RS24140 (J4N43_24010) | 65681..66733 | + | 1053 | WP_017634141.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| J4N43_RS24145 (J4N43_24015) | 66846..68006 | + | 1161 | WP_017634140.1 | galactokinase | - |
| J4N43_RS24150 (J4N43_24020) | 68778..69680 | + | 903 | WP_252094207.1 | homocysteine S-methyltransferase family protein | - |
| J4N43_RS24155 (J4N43_24025) | 69667..71202 | + | 1536 | WP_252094208.1 | BCCT family transporter | - |
| J4N43_RS24160 (J4N43_24030) | 71477..71758 | + | 282 | WP_000086647.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| J4N43_RS24165 (J4N43_24035) | 71755..72041 | + | 287 | Protein_68 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| J4N43_RS24170 (J4N43_24040) | 72169..72486 | - | 318 | WP_017634137.1 | CcdB family protein | - |
| J4N43_RS24175 (J4N43_24045) | 72486..72731 | - | 246 | WP_054579197.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| J4N43_RS24180 (J4N43_24050) | 72912..73229 | + | 318 | WP_252094209.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| J4N43_RS24185 (J4N43_24055) | 73232..73645 | + | 414 | WP_025998577.1 | hypothetical protein | Antitoxin Detail |
| J4N43_RS24190 (J4N43_24060) | 73672..74088 | + | 417 | WP_252094210.1 | hypothetical protein | - |
| J4N43_RS24195 (J4N43_24065) | 74820..75479 | + | 660 | WP_252094211.1 | hypothetical protein | - |
| J4N43_RS24200 (J4N43_24070) | 75494..75586 | + | 93 | WP_113795351.1 | DUF3265 domain-containing protein | - |
| J4N43_RS24205 (J4N43_24075) | 75623..76288 | + | 666 | WP_252094212.1 | DUF6338 family protein | - |
| J4N43_RS24210 (J4N43_24080) | 76438..76530 | + | 93 | WP_197072411.1 | DUF3265 domain-containing protein | - |
| J4N43_RS24215 (J4N43_24085) | 76562..77341 | + | 780 | WP_252094213.1 | hypothetical protein | - |
| J4N43_RS24220 (J4N43_24090) | 77370..78324 | - | 955 | Protein_79 | IS110 family transposase ISSde13 | Transposase |
| J4N43_RS24225 (J4N43_24095) | 78668..79243 | + | 576 | WP_252094214.1 | hypothetical protein | - |
| J4N43_RS24230 (J4N43_24100) | 79361..79756 | + | 396 | WP_252094215.1 | DUF3465 domain-containing protein | - |
| J4N43_RS24235 (J4N43_24105) | 79949..80203 | + | 255 | WP_017634119.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| J4N43_RS24240 (J4N43_24110) | 80196..80465 | + | 270 | WP_005464459.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| J4N43_RS24245 (J4N43_24115) | 80508..80597 | + | 90 | WP_081586720.1 | DUF3265 domain-containing protein | - |
| J4N43_RS24250 (J4N43_24120) | 80679..80936 | + | 258 | WP_017634117.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| J4N43_RS24255 (J4N43_24125) | 80924..81226 | + | 303 | WP_136976192.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| J4N43_RS24260 | 81261..81349 | + | 89 | Protein_87 | DUF3265 domain-containing protein | - |
| J4N43_RS24265 (J4N43_24130) | 81446..81880 | + | 435 | WP_017634115.1 | hypothetical protein | - |
| J4N43_RS24270 (J4N43_24135) | 81995..82447 | + | 453 | WP_054579183.1 | GIY-YIG nuclease family protein | - |
| J4N43_RS24275 (J4N43_24140) | 82673..82969 | + | 297 | WP_053307322.1 | YkgJ family cysteine cluster protein | - |
| J4N43_RS24280 (J4N43_24145) | 83415..84977 | - | 1563 | WP_025998574.1 | sensor domain-containing diguanylate cyclase | - |
| J4N43_RS24285 (J4N43_24150) | 85388..86887 | + | 1500 | WP_017634111.1 | hypothetical protein | VF |
| J4N43_RS24290 (J4N43_24155) | 86968..87480 | - | 513 | WP_017634110.1 | hypothetical protein | - |
| J4N43_RS24295 (J4N43_24160) | 87477..88628 | - | 1152 | WP_170890862.1 | phage tail protein | - |
| J4N43_RS24300 (J4N43_24165) | 88632..88955 | - | 324 | WP_024703879.1 | hypothetical protein | - |
| J4N43_RS24305 (J4N43_24170) | 88948..89580 | - | 633 | WP_054579188.1 | hypothetical protein | - |
| J4N43_RS24310 (J4N43_24175) | 89960..90130 | - | 171 | WP_155486354.1 | hypothetical protein | - |
| J4N43_RS24315 (J4N43_24180) | 90127..90660 | - | 534 | WP_017634104.1 | hypothetical protein | Relaxase |
| J4N43_RS24320 (J4N43_24185) | 90892..91257 | - | 366 | WP_213867176.1 | hypothetical protein | - |
| J4N43_RS24325 (J4N43_24190) | 91630..91998 | + | 369 | WP_213867177.1 | hypothetical protein | - |
| J4N43_RS24330 (J4N43_24195) | 92539..94104 | - | 1566 | WP_213867178.1 | hypothetical protein | - |
| J4N43_RS24335 (J4N43_24200) | 94117..95805 | - | 1689 | WP_213867179.1 | hypothetical protein | - |
| J4N43_RS24340 (J4N43_24205) | 96326..96540 | + | 215 | Protein_103 | Txe/YoeB family addiction module toxin | - |
| J4N43_RS24345 (J4N43_24210) | 96953..97522 | + | 570 | WP_017634097.1 | hypothetical protein | - |
| J4N43_RS24350 (J4N43_24215) | 97606..97923 | + | 318 | WP_053307329.1 | hypothetical protein | - |
| J4N43_RS24355 (J4N43_24220) | 98528..98677 | - | 150 | WP_017634095.1 | hypothetical protein | - |
| J4N43_RS24360 (J4N43_24225) | 98884..99093 | - | 210 | WP_017634094.1 | cold-shock protein | - |
| J4N43_RS24365 (J4N43_24230) | 99558..100943 | + | 1386 | WP_234499467.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| J4N43_RS24370 (J4N43_24235) | 101087..101653 | - | 567 | WP_064376472.1 | hypothetical protein | - |
| J4N43_RS24375 (J4N43_24240) | 101708..102386 | - | 679 | Protein_110 | C39 family peptidase | - |
| J4N43_RS24380 (J4N43_24245) | 102392..102716 | - | 325 | Protein_111 | carbon storage regulator | - |
| J4N43_RS24385 (J4N43_24250) | 102737..103665 | - | 929 | Protein_112 | dentin sialophosphoprotein | - |
| J4N43_RS24390 | 104225..104780 | + | 556 | Protein_113 | IS256 family transposase | - |
| J4N43_RS24395 (J4N43_24260) | 104848..105843 | - | 996 | WP_054579104.1 | transporter | - |
| J4N43_RS24400 (J4N43_24265) | 106313..106942 | - | 630 | WP_053307330.1 | tyrosine-type recombinase/integrase | - |
| J4N43_RS24405 (J4N43_24270) | 106942..107400 | - | 459 | WP_054577250.1 | hypothetical protein | - |
| J4N43_RS24410 (J4N43_24275) | 108445..109332 | + | 888 | WP_017634088.1 | hypothetical protein | - |
| J4N43_RS24415 (J4N43_24280) | 109441..110937 | - | 1497 | WP_252094216.1 | terminase | - |
| J4N43_RS24420 (J4N43_24285) | 110930..112324 | - | 1395 | WP_252094217.1 | hypothetical protein | - |
| J4N43_RS24425 (J4N43_24290) | 112632..113027 | + | 396 | WP_054579108.1 | hypothetical protein | - |
| J4N43_RS24430 (J4N43_24295) | 113024..113500 | + | 477 | WP_155486347.1 | metal-dependent hydrolase | - |
| J4N43_RS24435 (J4N43_24300) | 113984..114148 | - | 165 | WP_170894064.1 | hypothetical protein | - |
| J4N43_RS24440 (J4N43_24305) | 114206..114367 | - | 162 | WP_017634083.1 | hypothetical protein | - |
| J4N43_RS24445 (J4N43_24310) | 114905..115138 | - | 234 | WP_252094218.1 | hypothetical protein | - |
| J4N43_RS24450 (J4N43_24315) | 115116..115349 | - | 234 | WP_252094219.1 | hypothetical protein | - |
| J4N43_RS24455 (J4N43_24320) | 115342..115638 | - | 297 | WP_017634080.1 | HU family DNA-binding protein | - |
| J4N43_RS24460 (J4N43_24325) | 115638..115961 | - | 324 | WP_017634079.1 | HU family DNA-binding protein | - |
| J4N43_RS24465 (J4N43_24330) | 115940..116209 | - | 270 | WP_017634078.1 | hypothetical protein | - |
| J4N43_RS24470 (J4N43_24335) | 116329..117027 | - | 699 | WP_017634077.1 | hypothetical protein | - |
| J4N43_RS24475 (J4N43_24340) | 117054..117782 | - | 729 | WP_054579109.1 | VRR-NUC domain-containing protein | - |
| J4N43_RS24480 (J4N43_24345) | 117785..118165 | - | 381 | WP_017634075.1 | hypothetical protein | - |
| J4N43_RS24485 (J4N43_24350) | 118255..118554 | - | 300 | WP_054579110.1 | hypothetical protein | - |
| J4N43_RS24490 (J4N43_24355) | 118558..119049 | - | 492 | WP_170894063.1 | single-stranded DNA-binding protein | - |
| J4N43_RS24495 (J4N43_24360) | 119053..119355 | - | 303 | WP_017634072.1 | helix-turn-helix transcriptional regulator | - |
| J4N43_RS24500 (J4N43_24365) | 119330..119761 | - | 432 | WP_017634071.1 | hypothetical protein | - |
| J4N43_RS24505 (J4N43_24370) | 119889..120134 | + | 246 | WP_017634070.1 | hypothetical protein | - |
| J4N43_RS24510 (J4N43_24375) | 121926..123002 | - | 1077 | WP_054579113.1 | replication initiation protein | - |
| J4N43_RS24515 (J4N43_24380) | 123092..124009 | - | 918 | WP_017634068.1 | hypothetical protein | - |
| J4N43_RS24520 (J4N43_24385) | 124556..124912 | + | 357 | WP_252094220.1 | hypothetical protein | - |
| J4N43_RS24525 (J4N43_24390) | 125004..125957 | - | 954 | WP_017634066.1 | hypothetical protein | - |
| J4N43_RS24530 (J4N43_24395) | 125971..127644 | - | 1674 | WP_171343329.1 | portal protein | - |
| J4N43_RS24535 (J4N43_24400) | 128026..134745 | + | 6720 | WP_171343328.1 | SNF2-related protein | - |
| J4N43_RS24540 (J4N43_24405) | 134784..135209 | + | 426 | WP_054579116.1 | hypothetical protein | - |
| J4N43_RS24545 (J4N43_24410) | 135665..135904 | + | 240 | WP_017634062.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|