MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP068696 Location: 1319973..1331298 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Replicon: chromosome
Accession: NZ_CP068696 Location: 1319973..1331298 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKV46_RS06465 (1315419) | 1315419..1316517 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| JKV46_RS06470 (1316527) | 1316527..1318044 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| JKV46_RS06475 (1318120) | 1318120..1318665 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| JKV46_RS06480 (1318930) | 1318930..1319688 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| JKV46_RS06490 (1319973) | 1319973..1320779 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| JKV46_RS06495 (1321054) | 1321054..1321305 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| JKV46_RS06500 (1321482) | 1321482..1321709 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JKV46_RS06505 (1321709) | 1321709..1322107 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| JKV46_RS06510 (1322913) | 1322913..1323449 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| JKV46_RS06515 (1323496) | 1323496..1324128 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| JKV46_RS06520 (1324847) | 1324847..1325431 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| JKV46_RS06525 (1325551) | 1325551..1328040 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| JKV46_RS06530 (1328081) | 1328081..1328824 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| JKV46_RS06535 (1328821) | 1328821..1329897 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| JKV46_RS06540 (1330041) | 1330041..1330553 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| JKV46_RS06545 (1330540) | 1330540..1331298 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| JKV46_RS06550 (1331508) | 1331508..1332356 | - | 849 | WP_000503687.1 | nickel/cobalt efflux protein RcnA | - |
| JKV46_RS06555 (1332478) | 1332478..1332750 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| JKV46_RS06560 (1332781) | 1332781..1334010 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| JKV46_RS06565 (1334152) | 1334152..1334607 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| JKV46_RS06570 (1334711) | 1334711..1335574 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |