MGE detailed information
MGE type: Genomic_island MGE length: 11293 bp
Accession: NZ_CP067397 Location: 3124780..3136072 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Replicon: chromosome
Accession: NZ_CP067397 Location: 3124780..3136072 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB81_RS15155 (3120708) | 3120708..3121163 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| JJB81_RS15160 (3121305) | 3121305..3122534 | + | 1230 | WP_210138826.1 | amino acid permease | - |
| JJB81_RS15165 (3122565) | 3122565..3122837 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| JJB81_RS15170 (3122959) | 3122959..3123825 | + | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| JJB81_RS15175 (3124035) | 3124035..3124793 | - | 759 | WP_000134792.1 | transcriptional regulator | - |
| JJB81_RS15180 (3124780) | 3124780..3125292 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| JJB81_RS15185 (3125436) | 3125436..3126512 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| JJB81_RS15190 (3126509) | 3126509..3127252 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| JJB81_RS15195 (3127293) | 3127293..3129782 | - | 2490 | WP_000705484.1 | Outer membrane usher protein PapC | VF |
| JJB81_RS15200 (3129902) | 3129902..3130486 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| JJB81_RS15205 (3131205) | 3131205..3131837 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| JJB81_RS15210 (3131884) | 3131884..3132420 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| JJB81_RS15215 (3133100) | 3133100..3133558 | - | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| JJB81_RS15220 (3133938) | 3133938..3134336 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| JJB81_RS15225 (3134336) | 3134336..3134563 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JJB81_RS15230 (3134740) | 3134740..3134991 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| JJB81_RS15235 (3135266) | 3135266..3136072 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| JJB81_RS15245 (3136357) | 3136357..3137115 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| JJB81_RS15250 (3137380) | 3137380..3137925 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| JJB81_RS15255 (3138001) | 3138001..3139518 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.004 |