MGE detailed information
MGE type: Prophage MGE length: 11549 bp
Accession: NZ_CP064385 Location: 2468392..2479940 Organism: Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 Replicon: chromosome
Accession: NZ_CP064385 Location: 2468392..2479940 Organism: Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ38_RS12190 (2464048) | 2464048..2465019 | + | 972 | WP_001038948.1 | DMT family transporter | - |
| IUJ38_RS12195 (2465016) | 2465016..2466050 | + | 1035 | WP_000675710.1 | phosphotriesterase | - |
| IUJ38_RS12200 (2466095) | 2466095..2467837 | - | 1743 | WP_000805096.1 | gamma-glutamyltransferase | - |
| IUJ38_RS12205 (2467963) | 2467963..2468379 | + | 417 | WP_000826041.1 | DUF2756 family protein | - |
| IUJ38_RS12210 (2468392) | 2468392..2469132 | - | 741 | WP_000073548.1 | glycerophosphodiester phosphodiesterase | - |
| IUJ38_RS12215 (2469129) | 2469129..2470199 | - | 1071 | WP_000907838.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| IUJ38_RS12220 (2470201) | 2470201..2471046 | - | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| IUJ38_RS12225 (2471043) | 2471043..2471930 | - | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| IUJ38_RS12230 (2471994) | 2471994..2473310 | - | 1317 | WP_000624747.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| IUJ38_RS12235 (2473569) | 2473569..2473937 | - | 369 | WP_001521773.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| IUJ38_RS12240 (2473934) | 2473934..2474155 | - | 222 | WP_001520924.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| IUJ38_RS12245 (2474287) | 2474287..2475000 | - | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| IUJ38_RS12250 (2475002) | 2475002..2475769 | - | 768 | WP_000082083.1 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| IUJ38_RS12255 (2475766) | 2475766..2477043 | - | 1278 | WP_000803766.1 | branched chain amino acid ABC transporter permease LivM | - |
| IUJ38_RS12260 (2477040) | 2477040..2477966 | - | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| IUJ38_RS12265 (2478026) | 2478026..2479135 | - | 1110 | WP_000822976.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| IUJ38_RS12270 (2479557) | 2479557..2479940 | + | 384 | WP_000778873.1 | aspartate 1-decarboxylase autocleavage activator PanM | - |
| IUJ38_RS12275 (2479918) | 2479918..2480052 | + | 135 | WP_001517957.1 | hypothetical protein | - |
| IUJ38_RS12280 (2480135) | 2480135..2481238 | - | 1104 | WP_001521443.1 | branched chain amino acid ABC transporter substrate-binding protein LivJ | - |
| IUJ38_RS12285 (2481560) | 2481560..2482414 | - | 855 | WP_000159621.1 | RNA polymerase sigma factor RpoH | - |
| IUJ38_RS12290 (2482660) | 2482660..2483715 | - | 1056 | WP_001081707.1 | permease-like cell division protein FtsX | - |
| IUJ38_RS12295 (2483708) | 2483708..2484376 | - | 669 | WP_000617729.1 | cell division ATP-binding protein FtsE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25959 | NC_016810 | 3744081..3752732 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26059 | NC_016856 | 3736457..3745108 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297241 | UFRD01000002 | 3923220..3931871 | 0.008 |