MGE detailed information
MGE type: Genomic_island MGE length: 11293 bp
Accession: NZ_CP064385 Location: 1931625..1942917 Organism: Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 Replicon: chromosome
Accession: NZ_CP064385 Location: 1931625..1942917 Organism: Salmonella enterica subsp. enterica strain PartC-Senterica-RM8376 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ38_RS09520 (1927553) | 1927553..1928008 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| IUJ38_RS09525 (1928150) | 1928150..1929379 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| IUJ38_RS09530 (1929410) | 1929410..1929682 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| IUJ38_RS09535 (1929804) | 1929804..1930670 | + | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| IUJ38_RS09540 (1930880) | 1930880..1931638 | - | 759 | WP_000134792.1 | transcriptional regulator | - |
| IUJ38_RS09545 (1931625) | 1931625..1932137 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| IUJ38_RS09550 (1932281) | 1932281..1933357 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| IUJ38_RS09555 (1933354) | 1933354..1934097 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| IUJ38_RS09560 (1934138) | 1934138..1936627 | - | 2490 | WP_000705484.1 | Outer membrane usher protein PapC | VF |
| IUJ38_RS09565 (1936747) | 1936747..1937331 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| IUJ38_RS09570 (1938050) | 1938050..1938682 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| IUJ38_RS09575 (1938729) | 1938729..1939265 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| IUJ38_RS09580 (1939945) | 1939945..1940403 | - | 459 | WP_000502119.1 | IS200-IS605 family transposase IS200F | Transposase |
| IUJ38_RS09585 (1940783) | 1940783..1941181 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| IUJ38_RS09590 (1941181) | 1941181..1941408 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| IUJ38_RS09595 (1941585) | 1941585..1941836 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| IUJ38_RS09600 (1942111) | 1942111..1942917 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| IUJ38_RS09610 (1943202) | 1943202..1943960 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| IUJ38_RS09615 (1944225) | 1944225..1944770 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| IUJ38_RS09620 (1944846) | 1944846..1946363 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.004 |