MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP062241 Location: 1625259..1658720 Organism: Escherichia coli strain AML001_ev01 Replicon: chromosome
Accession: NZ_CP062241 Location: 1625259..1658720 Organism: Escherichia coli strain AML001_ev01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHN54_RS07880 () | 1621774..1622520 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| IHN54_RS07885 () | 1622609..1623295 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| IHN54_RS07890 () | 1623472..1623675 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| IHN54_RS07895 () | 1623710..1625170 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| IHN54_RS07900 () | 1625259..1626626 | - | 1368 | Protein_1543 | MHS family MFS transporter | - |
| IHN54_RS07905 () | 1627147..1627260 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| IHN54_RS07910 () | 1627329..1627562 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| IHN54_RS07915 () | 1627879..1628469 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| IHN54_RS07920 () | 1628567..1629142 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| IHN54_RS07925 () | 1629142..1630104 | - | 963 | WP_001027733.1 | phage tail protein | - |
| IHN54_RS07930 () | 1630055..1630624 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| IHN54_RS07935 () | 1631013..1631246 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| IHN54_RS07940 () | 1631304..1631714 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| IHN54_RS07945 () | 1631866..1632039 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| IHN54_RS07950 () | 1632211..1632366 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| IHN54_RS07955 () | 1632445..1632510 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| IHN54_RS07960 () | 1632513..1632701 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| IHN54_RS07965 () | 1632712..1632924 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| IHN54_RS07970 () | 1633287..1633784 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| IHN54_RS07975 () | 1633781..1634314 | - | 534 | WP_001092971.1 | lysozyme | - |
| IHN54_RS07980 () | 1634311..1634622 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| IHN54_RS07985 () | 1634627..1634842 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| IHN54_RS07990 () | 1635596..1635811 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| IHN54_RS07995 () | 1636112..1636324 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| IHN54_RS08000 () | 1636379..1636468 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| IHN54_RS08005 () | 1636746..1637498 | - | 753 | WP_001047135.1 | antitermination protein | - |
| IHN54_RS08010 () | 1637512..1638561 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| IHN54_RS08015 () | 1638563..1638841 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| IHN54_RS08020 () | 1638908..1639159 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| IHN54_RS08025 () | 1639376..1639531 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| IHN54_RS08030 () | 1639603..1639890 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| IHN54_RS08035 () | 1639890..1640129 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| IHN54_RS08040 () | 1640154..1640459 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| IHN54_RS08045 () | 1640662..1640994 | + | 333 | WP_001301033.1 | protein FlxA | - |
| IHN54_RS08050 () | 1641431..1641580 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| IHN54_RS08055 () | 1641615..1641893 | - | 279 | Protein_1574 | hypothetical protein | - |
| IHN54_RS08060 () | 1641877..1642107 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| IHN54_RS08065 () | 1642191..1642598 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| IHN54_RS08070 () | 1642765..1642920 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| IHN54_RS08075 () | 1643080..1643298 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| IHN54_RS08080 () | 1643866..1644054 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| IHN54_RS08085 () | 1644051..1644242 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| IHN54_RS08090 () | 1644335..1645102 | + | 768 | Protein_1581 | exonuclease | - |
| IHN54_RS08095 () | 1645099..1645794 | + | 696 | Protein_1582 | IS3 family transposase IS2 | Transposase |
| IHN54_RS08100 () | 1645808..1646965 | + | 1158 | Protein_1583 | Putative defective protein IntQ ; Integrase | Integrase |
| IHN54_RS08105 () | 1646985..1647095 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| IHN54_RS08110 () | 1647153..1648172 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| IHN54_RS08115 () | 1648184..1649398 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| IHN54_RS08120 () | 1649604..1649930 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| IHN54_RS08125 () | 1650065..1650406 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| IHN54_RS08130 () | 1650441..1651001 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| IHN54_RS08135 () | 1651004..1651714 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| IHN54_RS08140 () | 1651822..1652127 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| IHN54_RS08145 () | 1652326..1654752 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| IHN54_RS08150 () | 1654813..1657236 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| IHN54_RS08155 () | 1657247..1657864 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| IHN54_RS08160 () | 1657866..1658720 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| IHN54_RS08165 () | 1658763..1659377 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| IHN54_RS08170 () | 1659536..1660828 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| IHN54_RS08175 () | 1660781..1661476 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| IHN54_RS08180 () | 1661601..1662821 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |