MGE detailed information
MGE type: Conjugative plasmid MGE length: 128584 bp
Accession: NZ_CP053232 Location: 1..128584 Organism: Escherichia coli strain SCU-306 Replicon: plasmid pSCU-306-1
Accession: NZ_CP053232 Location: 1..128584 Organism: Escherichia coli strain SCU-306 Replicon: plasmid pSCU-306-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ44_RS24225 () | 265..828 | - | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| HHJ44_RS24230 () | 875..2236 | - | 1362 | WP_000170713.1 | DUF3560 domain-containing protein | - |
| HHJ44_RS24235 () | 2288..2518 | - | 231 | WP_000218647.1 | hypothetical protein | - |
| HHJ44_RS24240 () | 3552..3743 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| HHJ44_RS24245 () | 3846..4612 | + | 767 | Protein_4 | IS6 family transposase | - |
| HHJ44_RS24250 () | 5103..5683 | - | 581 | Protein_5 | TetR/AcrR family transcriptional regulator | - |
| HHJ44_RS24255 () | 5683..6921 | - | 1239 | Protein_6 | MFS transporter | - |
| HHJ44_RS24260 () | 6918..7823 | - | 906 | WP_170969090.1 | hypothetical protein | ARG |
| HHJ44_RS24265 () | 7945..8649 | - | 705 | WP_170969091.1 | IS6 family transposase IS26 | Transposase |
| HHJ44_RS24270 () | 8849..9504 | - | 656 | Protein_9 | IS30 family transposase IS30D | Transposase |
| HHJ44_RS24275 () | 9562..9843 | - | 282 | Protein_10 | IS3 family transposase IS911 | Transposase |
| HHJ44_RS24280 () | 9867..10487 | + | 621 | WP_071602693.1 | Serine protease EspP | VF |
| HHJ44_RS24285 () | 11172..11589 | - | 418 | Protein_12 | polymer-forming cytoskeletal protein | - |
| HHJ44_RS24290 () | 12479..12733 | - | 255 | Protein_13 | hypothetical protein | - |
| HHJ44_RS24295 () | 12826..13998 | + | 1173 | Protein_14 | IS21 family transposase IS21 | Transposase |
| HHJ44_RS24300 () | 13998..14795 | + | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| HHJ44_RS24305 () | 15080..15304 | + | 225 | WP_000493532.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HHJ44_RS24310 () | 15301..15687 | + | 387 | WP_000673985.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| HHJ44_RS24315 () | 16465..18171 | - | 1707 | WP_170969095.1 | ATM1-type heavy metal exporter | VF |
| HHJ44_RS24320 () | 18188..18868 | - | 681 | Protein_19 | lasso peptide biosynthesis B2 protein | - |
| HHJ44_RS24325 () | 18868..20254 | - | 1387 | Protein_20 | hypothetical protein | - |
| HHJ44_RS24330 () | 20382..20569 | - | 188 | Protein_21 | hypothetical protein | - |
| HHJ44_RS24335 () | 20781..21207 | + | 427 | Protein_22 | hypothetical protein | - |
| HHJ44_RS24340 () | 21225..21572 | - | 348 | WP_001554926.1 | hypothetical protein | - |
| HHJ44_RS24345 () | 21683..22030 | + | 348 | WP_021573051.1 | hypothetical protein | - |
| HHJ44_RS24350 () | 22048..22644 | - | 597 | WP_001554928.1 | hypothetical protein | - |
| HHJ44_RS24355 () | 22632..22901 | - | 270 | WP_001554929.1 | hypothetical protein | - |
| HHJ44_RS24360 () | 23496..23714 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HHJ44_RS24365 () | 23716..24021 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HHJ44_RS24370 () | 24022..24828 | + | 807 | WP_000016968.1 | site-specific integrase | - |
| HHJ44_RS24375 () | 25508..26209 | - | 702 | WP_016238649.1 | replication initiation protein | - |
| HHJ44_RS24380 () | 26860..28065 | + | 1206 | WP_001442122.1 | Plasmid partition protein A | VF |
| HHJ44_RS24385 () | 28062..29033 | + | 972 | WP_001233385.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ44_RS24390 () | 29170..30315 | - | 1146 | Protein_33 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HHJ44_RS24395 () | 30378..31376 | + | 999 | WP_000549075.1 | IS91 family transposase ISMno24 | Transposase |
| HHJ44_RS24400 () | 31373..32284 | + | 912 | WP_001442123.1 | hypothetical protein | - |
| HHJ44_RS24405 () | 32361..33584 | + | 1224 | WP_001696651.1 | tyrosine-type recombinase/integrase | - |
| HHJ44_RS24410 () | 33738..34950 | - | 1213 | Protein_37 | IS3 family transposase | - |
| HHJ44_RS24415 () | 34984..35599 | - | 616 | Protein_38 | hypothetical protein | - |
| HHJ44_RS24420 () | 36387..37364 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| HHJ44_RS24425 () | 37755..38916 | + | 1162 | Protein_40 | IS3 family transposase | - |
| HHJ44_RS24430 () | 38968..39532 | - | 565 | Protein_41 | site-specific integrase | - |
| HHJ44_RS24435 () | 39820..40008 | - | 189 | WP_170969092.1 | serine/threonine protein kinase | - |
| HHJ44_RS24440 () | 40370..41539 | + | 1170 | WP_001072359.1 | hypothetical protein | - |
| HHJ44_RS24445 () | 41765..41940 | - | 176 | Protein_44 | IS3 family transposase | - |
| HHJ44_RS24455 () | 43930..45900 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| HHJ44_RS24460 () | 45907..46698 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| HHJ44_RS24465 () | 46761..47426 | - | 666 | Protein_48 | IS66 family transposase ISEc22 | Transposase |
| HHJ44_RS24470 () | 47488..48284 | - | 797 | Protein_49 | IS21 family transposase IS21 | Transposase |
| HHJ44_RS24475 () | 48284..49456 | - | 1173 | Protein_50 | IS21 family transposase IS21 | Transposase |
| HHJ44_RS24480 () | 49557..49802 | + | 246 | Protein_51 | hypothetical protein | - |
| HHJ44_RS24485 () | 49858..51069 | + | 1212 | Protein_52 | IS3 family transposase | - |
| HHJ44_RS24490 () | 51178..51387 | - | 210 | WP_024192676.1 | hypothetical protein | - |
| HHJ44_RS24495 () | 51931..52278 | - | 348 | WP_023144239.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HHJ44_RS24500 () | 52439..54097 | + | 1659 | WP_001529697.1 | FAD-dependent oxidoreductase | - |
| HHJ44_RS24505 () | 55337..56023 | + | 687 | Protein_56 | primase C-terminal domain-containing protein | - |
| HHJ44_RS24510 () | 56356..57231 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| HHJ44_RS24515 () | 57239..58015 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| HHJ44_RS24520 () | 58184..60445 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| HHJ44_RS24525 () | 60514..61689 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| HHJ44_RS24530 () | 62211..62483 | - | 273 | Protein_61 | IS91 family transposase ISSbo1 | Transposase |
| HHJ44_RS24535 () | 62541..63752 | + | 1212 | Protein_62 | IS3 family transposase | - |
| HHJ44_RS24540 () | 63755..64324 | - | 570 | WP_001336919.1 | Serine protease EspC | VF |
| HHJ44_RS24545 () | 64426..65404 | + | 979 | Protein_64 | IS5 family transposase | - |
| HHJ44_RS24550 () | 65554..66186 | - | 633 | Protein_65 | histidine-type phosphatase | - |
| HHJ44_RS24555 () | 66308..66793 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| HHJ44_RS24560 () | 66818..67303 | - | 486 | WP_001554949.1 | TlpA family protein disulfide reductase | - |
| HHJ44_RS24565 () | 67290..67985 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| HHJ44_RS24570 () | 67990..69120 | - | 1131 | WP_001554947.1 | ABC transporter permease | - |
| HHJ44_RS24575 () | 69110..70393 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| HHJ44_RS24580 () | 70396..71775 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| HHJ44_RS24585 () | 71879..72406 | - | 528 | WP_000178050.1 | iron transporter | - |
| HHJ44_RS24590 () | 72447..74333 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| HHJ44_RS24595 () | 74680..75495 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| HHJ44_RS24600 () | 75678..76184 | - | 507 | WP_000949451.1 | protein disulfide oxidoreductase | - |
| HHJ44_RS24605 () | 76174..76332 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| HHJ44_RS24610 () | 76638..76859 | - | 222 | Protein_77 | transposase | - |
| HHJ44_RS24615 () | 76912..77616 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ44_RS24620 () | 77680..77814 | - | 135 | Protein_79 | helix-turn-helix transcriptional regulator | - |
| HHJ44_RS24625 () | 77825..79030 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| HHJ44_RS24630 () | 79186..79389 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| HHJ44_RS24635 () | 79517..80356 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| HHJ44_RS24640 () | 80350..80697 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| HHJ44_RS24645 () | 80861..81652 | - | 792 | WP_001206356.1 | Streptomycin 3''-adenylyltransferase | ARG |
| HHJ44_RS24650 () | 81658..81948 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| HHJ44_RS24655 () | 82060..82557 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| HHJ44_RS24660 () | 82702..83715 | + | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| HHJ44_RS24665 () | 83782..84477 | - | 696 | WP_170969093.1 | IS6 family transposase IS26 | Transposase |
| HHJ44_RS24670 () | 84542..84631 | - | 90 | Protein_89 | IS6 family transposase | - |
| HHJ44_RS24675 () | 84620..84964 | + | 345 | Protein_90 | incFII family plasmid replication initiator RepA | - |
| HHJ44_RS24680 () | 85662..85802 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| HHJ44_RS24685 () | 85900..86258 | + | 359 | Protein_92 | histidine phosphatase family protein | - |
| HHJ44_RS24690 () | 86255..86548 | + | 294 | Protein_93 | CPBP family intramembrane metalloprotease | - |
| HHJ44_RS24695 () | 86640..86897 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| HHJ44_RS24700 () | 86830..87231 | + | 402 | Protein_95 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| HHJ44_RS24705 () | 87448..88143 | + | 696 | Protein_96 | IS1 family transposase | - |
| HHJ44_RS24710 () | 88249..88681 | - | 433 | Protein_97 | Hg(II)-responsive transcriptional regulator | - |
| HHJ44_RS24715 () | 88753..88842 | + | 90 | Protein_98 | mercuric transport protein | - |
| HHJ44_RS24720 () | 88876..89355 | - | 480 | Protein_99 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HHJ44_RS24730 () | 90664..92808 | - | 2145 | Protein_101 | Tn3 family transposase TnpA_Tn3 | Transposase |
| HHJ44_RS24735 () | 92861..93565 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ44_RS24740 () | 93554..93898 | + | 345 | Protein_103 | incFII family plasmid replication initiator RepA | - |
| HHJ44_RS24745 () | 94818..95126 | - | 309 | Protein_104 | IS91 family transposase ISSbo1 | Transposase |
| HHJ44_RS24750 () | 95319..95513 | + | 195 | Protein_105 | transposase | - |
| HHJ44_RS24755 () | 95567..95806 | - | 240 | WP_001554944.1 | hypothetical protein | - |
| HHJ44_RS24760 () | 95836..96606 | - | 771 | WP_000712166.1 | molybdopterin-dependent oxidoreductase | - |
| HHJ44_RS24765 () | 96617..97216 | - | 600 | WP_001177184.1 | cytochrome b/b6 domain-containing protein | - |
| HHJ44_RS24770 () | 97358..98080 | + | 723 | WP_001057737.1 | Transcriptional regulatory protein WalR | VF |
| HHJ44_RS24775 () | 98077..99549 | + | 1473 | WP_000621194.1 | sensor histidine kinase | - |
| HHJ44_RS24780 () | 99700..100404 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ44_RS24785 () | 100454..102910 | + | 2457 | Protein_112 | Multifunctional conjugation protein TraI | Relaxase |
| HHJ44_RS24790 () | 102930..103676 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| HHJ44_RS24795 () | 103731..104291 | + | 561 | WP_000139325.1 | fertility inhibition protein FinO | - |
| HHJ44_RS24800 () | 104423..104635 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| HHJ44_RS24805 () | 104881..104967 | + | 87 | Protein_116 | endonuclease | - |
| HHJ44_RS24810 () | 105148..105459 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - () | 105755..105816 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 105755..105816 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 105755..105816 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 105755..105816 | - | 62 | NuclAT_1 | - | Antitoxin Detail |
| HHJ44_RS24815 () | 105803..106009 | + | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| HHJ44_RS24820 () | 106293..106550 | + | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| HHJ44_RS24825 () | 106785..106859 | + | 75 | WP_057113837.1 | RepA leader peptide Tap | - |
| HHJ44_RS24830 () | 106852..107448 | + | 597 | Protein_121 | incFII family plasmid replication initiator RepA | - |
| HHJ44_RS24835 () | 107500..108204 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| HHJ44_RS24840 () | 108269..108640 | - | 372 | Protein_123 | type IV conjugative transfer system lipoprotein TraV | - |
| HHJ44_RS24845 () | 108637..108888 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| HHJ44_RS24850 () | 108885..109202 | - | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| HHJ44_RS24855 () | 109199..109771 | - | 573 | WP_024179131.1 | conjugal transfer protein TraP | - |
| HHJ44_RS24860 () | 109761..111188 | - | 1428 | WP_000146668.1 | conjugal transfer protein TraB | - |
| HHJ44_RS24865 () | 111188..111892 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| HHJ44_RS24870 () | 111903..112469 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HHJ44_RS24875 () | 112491..112802 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HHJ44_RS24880 () | 112817..113176 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| HHJ44_RS24885 () | 113210..113437 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| HHJ44_RS24890 () | 113531..114216 | - | 686 | Protein_133 | PAS domain-containing protein | - |
| HHJ44_RS24895 () | 114316..115010 | - | 695 | Protein_134 | IS1 family transposase | - |
| HHJ44_RS24900 () | 115181..115564 | - | 384 | WP_000124983.1 | relaxosome protein TraM | - |
| HHJ44_RS24905 () | 115841..116488 | + | 648 | WP_000614936.1 | hypothetical protein | VF |
| HHJ44_RS24910 () | 116785..117606 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| HHJ44_RS24915 () | 117727..118014 | - | 288 | WP_000107537.1 | hypothetical protein | - |
| HHJ44_RS24920 () | 118078..118306 | + | 229 | Protein_139 | hypothetical protein | - |
| HHJ44_RS24925 () | 118925..119083 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 119127..119351 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 119127..119351 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 119127..119351 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 119127..119351 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| HHJ44_RS24930 () | 119163..119351 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| HHJ44_RS24935 () | 119363..120082 | - | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| HHJ44_RS24940 () | 120079..120513 | - | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| HHJ44_RS24945 () | 120568..122526 | - | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| HHJ44_RS24950 () | 122585..122818 | - | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| HHJ44_RS24955 () | 122874..123401 | - | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| HHJ44_RS24960 () | 124240..124431 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| HHJ44_RS24965 () | 124534..125298 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| HHJ44_RS24970 () | 125791..126375 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| HHJ44_RS24975 () | 126375..127613 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| HHJ44_RS24980 () | 127610..128515 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|