MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 89705 bp
Accession: NZ_CP050011 Location: 1..89705 Organism: Citrobacter sp. Y3 Replicon: plasmid unnamed2
Accession: NZ_CP050011 Location: 1..89705 Organism: Citrobacter sp. Y3 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAP28_RS25565 () | 8..587 | - | 580 | Protein_0 | type IV conjugative transfer system protein TraE | - |
| HAP28_RS25570 () | 593..856 | - | 264 | WP_166444333.1 | type IV conjugative transfer system protein TraL | - |
| HAP28_RS25575 () | 898..1251 | - | 354 | WP_013087194.1 | conjugal transfer protein TraA | - |
| HAP28_RS25580 () | 1448..2089 | + | 642 | WP_013087192.1 | Arc family DNA-binding protein | - |
| HAP28_RS25585 () | 2122..2517 | - | 396 | WP_045341741.1 | conjugal transfer protein | - |
| HAP28_RS25590 () | 3091..3630 | + | 540 | WP_166444334.1 | hypothetical protein | VF |
| HAP28_RS25595 () | 3659..4480 | - | 822 | WP_166444335.1 | DUF945 domain-containing protein | - |
| HAP28_RS25600 () | 5479..5814 | - | 336 | WP_166444336.1 | hypothetical protein | - |
| HAP28_RS25605 () | 5857..6648 | - | 792 | WP_166444337.1 | N-6 DNA methylase | - |
| HAP28_RS25610 () | 6689..6835 | - | 147 | WP_047353114.1 | hypothetical protein | - |
| HAP28_RS25615 () | 6923..7384 | - | 462 | WP_166444338.1 | DUF1419 domain-containing protein | - |
| HAP28_RS25620 () | 7462..7668 | - | 207 | WP_166444339.1 | hypothetical protein | - |
| HAP28_RS25625 () | 7730..8044 | - | 315 | WP_166444340.1 | hypothetical protein | - |
| HAP28_RS25630 () | 8669..9154 | + | 486 | WP_166444341.1 | cytoplasmic protein | - |
| HAP28_RS25635 () | 9431..9589 | - | 159 | WP_014063856.1 | type I toxin-antitoxin system Hok family toxin | - |
| HAP28_RS25640 () | 9661..9948 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HAP28_RS25645 () | 9948..10187 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HAP28_RS25650 () | 10450..11373 | - | 924 | WP_000167917.1 | cation diffusion facilitator family transporter | - |
| HAP28_RS25655 () | 11573..12145 | - | 573 | WP_001515348.1 | cytochrome b/b6 domain-containing protein | - |
| HAP28_RS25660 () | 12788..14128 | - | 1341 | WP_000589001.1 | ISNCY family transposase ISCARN112 | Transposase |
| HAP28_RS25665 () | 14438..14632 | - | 195 | WP_166444367.1 | hypothetical protein | - |
| HAP28_RS25670 () | 14674..14904 | - | 231 | WP_166444342.1 | hypothetical protein | - |
| HAP28_RS25675 () | 14901..15632 | - | 732 | WP_166444343.1 | plasmid SOS inhibition protein A | - |
| HAP28_RS25680 () | 15629..16063 | - | 435 | WP_166444368.1 | conjugation system SOS inhibitor PsiB | - |
| HAP28_RS25685 () | 16101..18113 | - | 2013 | WP_166444344.1 | ParB/RepB/Spo0J family partition protein | - |
| HAP28_RS25690 () | 18181..18546 | - | 366 | WP_166444345.1 | hypothetical protein | - |
| HAP28_RS25695 () | 18590..18862 | - | 273 | WP_166444346.1 | hypothetical protein | - |
| HAP28_RS25700 () | 19637..19834 | - | 198 | WP_048209979.1 | hypothetical protein | - |
| HAP28_RS25705 () | 19877..20305 | - | 429 | WP_166444347.1 | antirestriction protein | - |
| HAP28_RS25710 () | 20662..21084 | - | 423 | WP_166444348.1 | DUF1380 family protein | - |
| HAP28_RS25715 () | 21140..21361 | - | 222 | WP_166444349.1 | hypothetical protein | - |
| HAP28_RS25720 () | 21358..22050 | - | 693 | WP_166444350.1 | DNA methylase | - |
| HAP28_RS25725 () | 22445..22912 | - | 468 | WP_166444351.1 | hypothetical protein | - |
| HAP28_RS25730 () | 23273..23476 | - | 204 | WP_166444352.1 | hypothetical protein | - |
| HAP28_RS25735 () | 23505..23768 | - | 264 | WP_166444353.1 | hypothetical protein | - |
| HAP28_RS25740 () | 23772..24437 | - | 666 | WP_166444354.1 | plasmid partitioning/stability family protein | - |
| HAP28_RS25745 () | 24440..25411 | - | 972 | WP_166444369.1 | StbA family protein | - |
| HAP28_RS25750 () | 25646..26077 | + | 432 | WP_166444355.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HAP28_RS25755 () | 26077..27321 | + | 1245 | Protein_38 | Y-family DNA polymerase | - |
| HAP28_RS25760 () | 27997..28962 | - | 966 | WP_013087134.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| HAP28_RS25765 () | 28962..30128 | - | 1167 | WP_023327689.1 | plasmid-partitioning protein SopA | - |
| HAP28_RS25770 () | 30869..31879 | + | 1011 | WP_015572055.1 | RepB family plasmid replication initiator protein | - |
| HAP28_RS25775 () | 32123..32380 | - | 258 | Protein_42 | site-specific integrase | - |
| HAP28_RS25780 () | 32582..33358 | - | 777 | WP_061549454.1 | site-specific integrase | - |
| HAP28_RS25785 () | 33377..33907 | - | 531 | WP_013087127.1 | hypothetical protein | - |
| HAP28_RS25790 () | 33972..34268 | - | 297 | WP_205694376.1 | hypothetical protein | - |
| HAP28_RS25795 () | 34969..35964 | + | 996 | WP_061549453.1 | hypothetical protein | - |
| HAP28_RS25800 () | 35968..36900 | + | 933 | WP_166444356.1 | hypothetical protein | - |
| HAP28_RS25805 () | 37162..38037 | + | 876 | WP_061549451.1 | hypothetical protein | - |
| HAP28_RS25810 () | 38101..38286 | - | 186 | WP_061549450.1 | hypothetical protein | - |
| HAP28_RS25815 () | 38441..38839 | + | 399 | WP_061549449.1 | hypothetical protein | - |
| HAP28_RS25820 () | 39807..40037 | + | 231 | WP_061549448.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HAP28_RS25825 () | 40034..40450 | + | 417 | WP_061549447.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HAP28_RS25830 () | 40640..40966 | + | 327 | WP_071789783.1 | four-helix bundle copper-binding protein | - |
| HAP28_RS25835 () | 41473..41703 | + | 231 | WP_024553479.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HAP28_RS25840 () | 41700..42116 | + | 417 | WP_024553480.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HAP28_RS25850 () | 43522..45486 | + | 1965 | WP_166444370.1 | NERD domain-containing protein | - |
| HAP28_RS25855 () | 45852..46082 | + | 231 | WP_166444357.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HAP28_RS25860 () | 46079..46495 | + | 417 | WP_166444358.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HAP28_RS25865 () | 46683..47585 | - | 903 | WP_061549446.1 | LysR family transcriptional regulator | - |
| HAP28_RS25870 () | 47709..49100 | + | 1392 | WP_061549445.1 | MFS transporter | - |
| HAP28_RS25875 () | 49361..51982 | + | 2622 | WP_166444359.1 | histidinol-phosphatase | - |
| HAP28_RS25880 () | 52248..53222 | - | 975 | WP_004213565.1 | sensor domain-containing diguanylate cyclase | - |
| HAP28_RS25890 () | 55195..56103 | + | 909 | WP_001372261.1 | HNH endonuclease | - |
| HAP28_RS25895 () | 56491..56841 | - | 351 | WP_166444360.1 | DUF305 domain-containing protein | - |
| HAP28_RS25900 () | 56985..57416 | - | 432 | WP_045409016.1 | silver-binding protein SilE | - |
| HAP28_RS25905 () | 57667..59142 | - | 1476 | WP_064148682.1 | copper/silver sensor histidine kinase SilS | - |
| HAP28_RS25910 () | 59135..59815 | - | 681 | WP_000697969.1 | Transcriptional regulatory protein CusR | VF |
| HAP28_RS25915 () | 60005..61390 | + | 1386 | WP_047067158.1 | hypothetical protein | VF |
| HAP28_RS25920 () | 61419..61772 | + | 354 | WP_166444361.1 | cation efflux system protein CusF | - |
| HAP28_RS25925 () | 61886..63178 | + | 1293 | WP_049016439.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| HAP28_RS25930 () | 63189..66335 | + | 3147 | WP_000574021.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| HAP28_RS25935 () | 66422..66862 | + | 441 | WP_002436620.1 | hypothetical protein | - |
| HAP28_RS25940 () | 66960..69431 | + | 2472 | WP_166444362.1 | Ag(+)-translocating P-type ATPase SilP | - |
| HAP28_RS25945 () | 69472..69669 | + | 198 | WP_000843494.1 | DUF2933 domain-containing protein | - |
| HAP28_RS25950 () | 69703..70440 | - | 738 | WP_000287501.1 | hypothetical protein | VF |
| HAP28_RS25955 () | 70729..71178 | - | 450 | WP_001023257.1 | copper resistance protein | - |
| HAP28_RS25960 () | 71466..72694 | + | 1229 | WP_110129298.1 | IS3 family transposase ISEc27 | Transposase |
| HAP28_RS25965 () | 72749..73132 | + | 384 | Protein_80 | multicopper oxidase domain-containing protein | - |
| HAP28_RS25970 () | 73190..73887 | + | 698 | Protein_81 | IS1 family transposase IS1R | Transposase |
| HAP28_RS25975 () | 74046..75269 | - | 1224 | WP_166444371.1 | OprD family outer membrane porin | - |
| HAP28_RS25980 () | 75671..76120 | - | 450 | WP_041413283.1 | DUF2057 family protein | - |
| HAP28_RS25985 () | 77008..77198 | - | 191 | Protein_84 | hypothetical protein | - |
| HAP28_RS25990 () | 77462..78613 | - | 1152 | WP_109867410.1 | hypothetical protein | - |
| HAP28_RS25995 () | 78846..79823 | + | 978 | WP_013087234.1 | tyrosine-type recombinase/integrase | - |
| HAP28_RS26000 () | 80211..81418 | + | 1208 | WP_094487604.1 | IS3 family transposase ISEcl1 | Transposase |
| HAP28_RS26005 () | 81415..81804 | - | 390 | WP_166444363.1 | type II toxin-antitoxin system YafO family toxin | - |
| HAP28_RS26010 () | 81795..82346 | - | 552 | WP_013087231.1 | hypothetical protein | - |
| HAP28_RS26015 () | 82447..83232 | - | 786 | WP_166444364.1 | DsbA family protein | - |
| HAP28_RS26020 () | 83260..84687 | - | 1428 | Protein_91 | hypothetical protein | Relaxase |
| HAP28_RS26025 () | 84683..85495 | - | 813 | Protein_92 | type IV conjugative transfer system coupling protein TraD | - |
| HAP28_RS26030 () | 85567..86202 | - | 636 | WP_013087208.1 | type-F conjugative transfer system protein TraW | - |
| HAP28_RS26035 () | 86199..86612 | - | 414 | WP_166444365.1 | type-F conjugative transfer system protein TrbI | - |
| HAP28_RS26040 () | 86609..89122 | - | 2514 | Protein_95 | type IV secretion system protein TraC | - |
| HAP28_RS26170 () | 89120..89701 | - | 582 | Protein_96 | type-F conjugative transfer system secretin TraK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|