MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 102423 bp
Accession: NZ_CP048880 Location: 1..102423 Organism: Spartinivicinus ruber strain S2-4-1H Replicon: plasmid pB
Accession: NZ_CP048880 Location: 1..102423 Organism: Spartinivicinus ruber strain S2-4-1H Replicon: plasmid pB
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4Y78_RS30695 () | 282..683 | - | 402 | WP_178124488.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| G4Y78_RS30700 () | 684..920 | - | 237 | WP_178124489.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| G4Y78_RS29430 () | 1206..1385 | + | 180 | WP_163836801.1 | hypothetical protein | - |
| G4Y78_RS29435 () | 1355..2266 | - | 912 | WP_163836802.1 | Transcriptional activator protein NhaR | VF |
| G4Y78_RS29440 () | 2466..2813 | + | 348 | WP_163836803.1 | HPF/RaiA family ribosome-associated protein | - |
| G4Y78_RS29445 () | 2860..3522 | + | 663 | WP_163836804.1 | Bax inhibitor-1/YccA family protein | - |
| G4Y78_RS29450 () | 3734..3928 | + | 195 | WP_163836805.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| G4Y78_RS29455 () | 3928..4308 | + | 381 | WP_163836806.1 | VapC toxin family PIN domain ribonuclease | - |
| G4Y78_RS29460 () | 4757..7354 | - | 2598 | WP_163836807.1 | proprotein convertase P-domain-containing protein | - |
| G4Y78_RS29465 () | 7534..11856 | - | 4323 | WP_163836808.1 | hypothetical protein | - |
| G4Y78_RS29470 () | 11944..12324 | - | 381 | WP_163836911.1 | IS6 family transposase ISYps1 | Transposase |
| G4Y78_RS29475 () | 12386..12613 | + | 228 | WP_163836912.1 | DDE-type integrase/transposase/recombinase | - |
| G4Y78_RS29480 () | 12767..13060 | - | 294 | WP_163836809.1 | hypothetical protein | - |
| G4Y78_RS29485 () | 13518..14051 | - | 534 | WP_163836810.1 | hypothetical protein | - |
| G4Y78_RS29490 () | 14285..14632 | - | 348 | WP_163836811.1 | hypothetical protein | - |
| G4Y78_RS29495 () | 15690..17012 | + | 1323 | WP_163836812.1 | hypothetical protein | - |
| G4Y78_RS29500 () | 17172..18410 | - | 1239 | WP_163836813.1 | ATP-binding protein | - |
| G4Y78_RS29505 () | 19021..19230 | + | 210 | WP_163836913.1 | cold-shock protein | - |
| G4Y78_RS29510 () | 19278..19577 | - | 300 | WP_163836814.1 | helix-turn-helix domain-containing protein | - |
| G4Y78_RS29515 () | 19691..19924 | + | 234 | WP_163836104.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| G4Y78_RS29520 () | 19924..20337 | + | 414 | WP_163836103.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| G4Y78_RS29525 () | 20367..20549 | + | 183 | WP_163836815.1 | hypothetical protein | - |
| G4Y78_RS29530 () | 20577..21233 | - | 657 | WP_163836101.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| G4Y78_RS29535 () | 21344..21598 | + | 255 | WP_163836097.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Toxin Detail |
| G4Y78_RS29540 () | 21595..21849 | + | 255 | WP_163836100.1 | Txe/YoeB family addiction module toxin | Antitoxin Detail |
| G4Y78_RS29545 () | 22288..22554 | + | 267 | WP_163836099.1 | hypothetical protein | - |
| G4Y78_RS29550 () | 22544..22924 | + | 381 | WP_163836098.1 | type II toxin-antitoxin system VapC family toxin | - |
| G4Y78_RS29555 () | 23140..23646 | - | 507 | WP_163836816.1 | N-acetyltransferase | - |
| G4Y78_RS29560 () | 23917..24150 | + | 234 | WP_163836817.1 | hypothetical protein | - |
| G4Y78_RS29565 () | 24422..25966 | + | 1545 | WP_163836818.1 | RHS repeat protein | - |
| G4Y78_RS29570 () | 26068..28848 | + | 2781 | WP_163836819.1 | RHS repeat protein | - |
| G4Y78_RS29575 () | 28862..29374 | + | 513 | WP_163836820.1 | hypothetical protein | - |
| G4Y78_RS29580 () | 29653..29925 | - | 273 | WP_163836821.1 | XRE family transcriptional regulator | - |
| G4Y78_RS29585 () | 29962..30276 | - | 315 | WP_163836822.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| G4Y78_RS29590 () | 30374..31135 | - | 762 | WP_163836823.1 | hypothetical protein | - |
| G4Y78_RS29595 () | 31224..32066 | - | 843 | WP_163836824.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS29600 () | 32088..32195 | + | 108 | WP_163836914.1 | DUF4113 domain-containing protein | - |
| G4Y78_RS29605 () | 32238..32930 | + | 693 | WP_163836825.1 | SOS response-associated peptidase family protein | - |
| G4Y78_RS29610 () | 32947..33588 | - | 642 | WP_163836915.1 | DUF4145 domain-containing protein | - |
| G4Y78_RS29615 () | 33621..34451 | - | 831 | WP_163836826.1 | nucleotide-binding protein | - |
| G4Y78_RS29620 () | 34602..35141 | - | 540 | WP_163836827.1 | hypothetical protein | - |
| G4Y78_RS29625 () | 35227..35604 | - | 378 | WP_163836828.1 | hypothetical protein | - |
| G4Y78_RS29630 () | 35601..35960 | - | 360 | WP_163836829.1 | hypothetical protein | - |
| G4Y78_RS29635 () | 35957..36355 | - | 399 | WP_163836830.1 | hypothetical protein | - |
| G4Y78_RS29640 () | 36355..36648 | - | 294 | WP_163836831.1 | hypothetical protein | - |
| G4Y78_RS29645 () | 36651..36812 | - | 162 | WP_163836832.1 | hypothetical protein | - |
| G4Y78_RS29650 () | 37672..38478 | - | 807 | WP_163836833.1 | recombinase RecT | - |
| G4Y78_RS29655 () | 38540..39583 | - | 1044 | WP_163836834.1 | YqaJ viral recombinase family protein | - |
| G4Y78_RS29660 () | 39587..39901 | - | 315 | WP_163836835.1 | hypothetical protein | - |
| G4Y78_RS29665 () | 40041..40520 | - | 480 | WP_163836836.1 | hypothetical protein | - |
| G4Y78_RS29670 () | 40834..41592 | + | 759 | WP_163836837.1 | NYN domain-containing protein | - |
| G4Y78_RS29675 () | 41589..42206 | - | 618 | WP_163836838.1 | helix-turn-helix domain-containing protein | - |
| G4Y78_RS29680 () | 42283..42507 | + | 225 | WP_163836839.1 | Cro/Cl family transcriptional regulator | - |
| G4Y78_RS29685 () | 42485..43108 | + | 624 | WP_163836840.1 | hypothetical protein | - |
| G4Y78_RS29690 () | 43529..44392 | + | 864 | WP_163836841.1 | replication protein | - |
| G4Y78_RS29695 () | 44396..45118 | + | 723 | WP_163836842.1 | replication protein P | - |
| G4Y78_RS29700 () | 45239..45841 | + | 603 | WP_163836843.1 | hypothetical protein | - |
| G4Y78_RS29705 () | 45828..46952 | + | 1125 | WP_163836844.1 | XRE family transcriptional regulator | - |
| G4Y78_RS29710 () | 47109..47981 | + | 873 | WP_163836845.1 | hypothetical protein | - |
| G4Y78_RS29715 () | 48181..48345 | + | 165 | WP_163836846.1 | IS6 family transposase ISEas1 | Transposase |
| G4Y78_RS29720 () | 48510..48863 | - | 354 | WP_163836847.1 | hypothetical protein | - |
| G4Y78_RS29725 () | 49101..49724 | + | 624 | Protein_61 | hypothetical protein | - |
| G4Y78_RS29730 () | 49912..50610 | + | 699 | WP_163836848.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS29735 () | 51170..51331 | - | 162 | WP_163836800.1 | hypothetical protein | - |
| G4Y78_RS29740 () | 51549..51737 | - | 189 | WP_163836849.1 | hypothetical protein | - |
| G4Y78_RS29745 () | 51810..51995 | - | 186 | WP_163836850.1 | hypothetical protein | - |
| G4Y78_RS29750 () | 52175..52390 | + | 216 | WP_163836851.1 | hypothetical protein | - |
| G4Y78_RS29755 () | 52390..52698 | + | 309 | WP_163836852.1 | hypothetical protein | - |
| G4Y78_RS29760 () | 52703..53023 | + | 321 | WP_163836853.1 | hypothetical protein | - |
| G4Y78_RS29765 () | 53065..53274 | + | 210 | WP_163836854.1 | hypothetical protein | - |
| G4Y78_RS29770 () | 53363..53614 | + | 252 | WP_163836855.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| G4Y78_RS29775 () | 53607..53810 | + | 204 | WP_163836856.1 | hypothetical protein | - |
| G4Y78_RS29780 () | 53817..54158 | + | 342 | WP_163836857.1 | hypothetical protein | - |
| G4Y78_RS29785 () | 54176..55135 | - | 960 | WP_163836858.1 | Transcription termination factor Rho | VF |
| G4Y78_RS29790 () | 55703..56107 | + | 405 | WP_163836859.1 | hypothetical protein | - |
| G4Y78_RS29795 () | 56110..56325 | + | 216 | WP_163836860.1 | hypothetical protein | - |
| G4Y78_RS29800 () | 56322..56525 | + | 204 | WP_163836861.1 | hypothetical protein | - |
| G4Y78_RS29805 () | 56515..57138 | + | 624 | WP_163836862.1 | hypothetical protein | - |
| G4Y78_RS29810 () | 57135..58619 | + | 1485 | WP_163836863.1 | terminase | - |
| G4Y78_RS29815 () | 58619..60019 | + | 1401 | WP_163836864.1 | DUF4055 domain-containing protein | - |
| G4Y78_RS29820 () | 60012..61112 | + | 1101 | WP_163836865.1 | minor capsid protein | - |
| G4Y78_RS29825 () | 61128..61877 | + | 750 | WP_163836866.1 | hypothetical protein | - |
| G4Y78_RS29830 () | 61890..62903 | + | 1014 | WP_163836867.1 | phage coat protein | - |
| G4Y78_RS29835 () | 62935..63225 | + | 291 | WP_163836868.1 | hypothetical protein | - |
| G4Y78_RS29840 () | 63227..63733 | + | 507 | WP_163836869.1 | hypothetical protein | - |
| G4Y78_RS29845 () | 63730..64089 | + | 360 | WP_163836870.1 | hypothetical protein | - |
| G4Y78_RS29850 () | 64086..64472 | + | 387 | WP_178124490.1 | HK97 gp10 family phage protein | - |
| G4Y78_RS29855 () | 64469..64885 | + | 417 | WP_163836871.1 | hypothetical protein | - |
| G4Y78_RS29860 () | 64886..65824 | + | 939 | WP_163836872.1 | hypothetical protein | - |
| G4Y78_RS29865 () | 65824..66198 | + | 375 | WP_163836873.1 | hypothetical protein | - |
| G4Y78_RS29870 () | 66225..66533 | + | 309 | WP_163836874.1 | hypothetical protein | - |
| G4Y78_RS29875 () | 66499..69435 | + | 2937 | WP_163836875.1 | tape measure protein | - |
| G4Y78_RS29880 () | 69435..70346 | + | 912 | WP_163836876.1 | hypothetical protein | - |
| G4Y78_RS29885 () | 70346..71314 | + | 969 | WP_163836877.1 | hypothetical protein | - |
| G4Y78_RS29890 () | 71311..72960 | + | 1650 | WP_163836878.1 | hypothetical protein | - |
| G4Y78_RS29895 () | 72957..73757 | + | 801 | WP_163836879.1 | phage BR0599 family protein | - |
| G4Y78_RS29900 () | 73757..73987 | + | 231 | WP_163836880.1 | hypothetical protein | - |
| G4Y78_RS29905 () | 73984..74181 | + | 198 | WP_163836881.1 | hypothetical protein | - |
| G4Y78_RS29910 () | 74157..77006 | + | 2850 | WP_163836882.1 | hypothetical protein | - |
| G4Y78_RS29915 () | 77006..77458 | + | 453 | WP_163836883.1 | DUF2793 domain-containing protein | - |
| G4Y78_RS29920 () | 77808..78473 | + | 666 | WP_163836884.1 | AAA family ATPase | - |
| G4Y78_RS29925 () | 78484..79392 | + | 909 | WP_163836885.1 | ParB/RepB/Spo0J family partition protein | - |
| G4Y78_RS29930 () | 79449..80510 | - | 1062 | WP_163836886.1 | replication initiation protein | - |
| G4Y78_RS29935 () | 81248..81706 | + | 459 | WP_163836887.1 | lysozyme | - |
| G4Y78_RS29940 () | 81746..82138 | + | 393 | WP_163836888.1 | hypothetical protein | - |
| G4Y78_RS29945 () | 82160..82432 | - | 273 | WP_163836889.1 | HU family DNA-binding protein | - |
| G4Y78_RS29950 () | 82658..82873 | + | 216 | WP_163836890.1 | hypothetical protein | - |
| G4Y78_RS29955 () | 82886..83233 | + | 348 | WP_163836891.1 | hypothetical protein | - |
| G4Y78_RS29960 () | 83401..84264 | + | 864 | WP_163836892.1 | hypothetical protein | VF |
| G4Y78_RS29965 () | 84388..84615 | + | 228 | WP_163836893.1 | EexN family lipoprotein | - |
| G4Y78_RS29970 () | 84646..84873 | - | 228 | WP_163836894.1 | WGR domain-containing protein | - |
| G4Y78_RS29975 () | 85206..85997 | + | 792 | WP_163836895.1 | rhodanese-like domain-containing protein | - |
| G4Y78_RS29980 () | 86160..86639 | + | 480 | WP_163836896.1 | hypothetical protein | - |
| G4Y78_RS29985 () | 86733..87440 | - | 708 | WP_163836897.1 | outer membrane beta-barrel protein | - |
| G4Y78_RS29990 () | 87889..88479 | - | 591 | WP_163836109.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| G4Y78_RS29995 () | 88670..90397 | + | 1728 | WP_163836898.1 | DUF4158 domain-containing protein | - |
| G4Y78_RS30000 () | 90411..91936 | + | 1526 | Protein_116 | IS3 family transposase ISPpr7 | Transposase |
| G4Y78_RS30005 () | 92138..93577 | + | 1440 | WP_163836899.1 | Tn3 family transposase ISPsy42 | Transposase |
| G4Y78_RS30010 () | 93578..94018 | - | 441 | WP_163836900.1 | transporter substrate-binding domain-containing protein | - |
| G4Y78_RS30015 () | 94063..94278 | - | 216 | WP_163836901.1 | toxin-antitoxin system HicB family antitoxin | - |
| G4Y78_RS30020 () | 94250..94699 | - | 450 | WP_163836902.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| G4Y78_RS30025 () | 95010..95558 | - | 549 | WP_163836903.1 | hypothetical protein | - |
| G4Y78_RS30030 () | 95820..96242 | - | 423 | WP_163836904.1 | hypothetical protein | - |
| G4Y78_RS30035 () | 96900..97088 | + | 189 | WP_163836905.1 | hypothetical protein | - |
| G4Y78_RS30040 () | 97195..97803 | + | 609 | WP_163836906.1 | AbiEi antitoxin N-terminal domain-containing protein | - |
| G4Y78_RS30045 () | 97800..98006 | + | 207 | Protein_125 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| G4Y78_RS30050 () | 98008..98343 | + | 336 | WP_163836907.1 | IS6 family transposase ISEas1 | Transposase |
| G4Y78_RS30055 () | 98651..98971 | - | 321 | WP_163836089.1 | XRE family transcriptional regulator | Antitoxin Detail |
| G4Y78_RS30060 () | 98987..99337 | - | 351 | WP_163836090.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| G4Y78_RS30065 () | 99552..99743 | + | 192 | WP_163836908.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| G4Y78_RS30070 () | 99743..100156 | + | 414 | WP_163836909.1 | PIN domain nuclease | - |
| G4Y78_RS30075 () | 100203..100604 | - | 402 | WP_163836910.1 | IS200-IS605 family transposase IS1253B | Transposase |
| G4Y78_RS30080 () | 100644..101747 | + | 1104 | Protein_132 | IS200-IS605 family transposase IS1253B | Transposase |
| G4Y78_RS30085 () | 102016..102063 | + | 48 | WP_163836916.1 | hypothetical protein | - |
| G4Y78_RS30090 () | 102133..102384 | - | 252 | WP_187697957.1 | tail fiber domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|