MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP047555 Location: 277854..288434 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Replicon: chromosome
Accession: NZ_CP047555 Location: 277854..288434 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN18_RS01320 (273794) | 273794..274249 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN18_RS01325 (274391) | 274391..275620 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN18_RS01330 (275651) | 275651..275923 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN18_RS01335 (276045) | 276045..276899 | + | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN18_RS01340 (277109) | 277109..277867 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN18_RS01345 (277854) | 277854..278366 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN18_RS01350 (278510) | 278510..279586 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN18_RS01355 (279583) | 279583..280326 | - | 744 | WP_000798504.1 | NADH peroxidase | VF |
| DXN18_RS01360 (280367) | 280367..282856 | - | 2490 | WP_000705483.1 | hypothetical protein | VF |
| DXN18_RS01365 (282976) | 282976..283560 | - | 585 | WP_001244638.1 | Transketolase | VF |
| DXN18_RS01370 (284279) | 284279..284911 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN18_RS01375 (284958) | 284958..285494 | - | 537 | WP_001038506.1 | ABC-type transporter ATP-binding protein EcsA | VF |
| DXN18_RS01380 (286300) | 286300..286698 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN18_RS01385 (286698) | 286698..286925 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN18_RS01390 (287102) | 287102..287353 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN18_RS01395 (287628) | 287628..288434 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN18_RS01405 (288719) | 288719..289477 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN18_RS01410 (289742) | 289742..290287 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN18_RS01415 (290363) | 290363..291880 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |