MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP047548 Location: 4099471..4110051 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10169 Replicon: chromosome
Accession: NZ_CP047548 Location: 4099471..4110051 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10169 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN26_RS20075 (4095411) | 4095411..4095866 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN26_RS20080 (4096008) | 4096008..4097237 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN26_RS20085 (4097268) | 4097268..4097540 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN26_RS20090 (4097662) | 4097662..4098516 | + | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN26_RS20095 (4098726) | 4098726..4099484 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN26_RS20100 (4099471) | 4099471..4099983 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN26_RS20105 (4100127) | 4100127..4101203 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN26_RS20110 (4101200) | 4101200..4101943 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| DXN26_RS20115 (4101984) | 4101984..4104473 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| DXN26_RS20120 (4104593) | 4104593..4105177 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| DXN26_RS20125 (4105896) | 4105896..4106528 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN26_RS20130 (4106575) | 4106575..4107111 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| DXN26_RS20135 (4107917) | 4107917..4108315 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN26_RS20140 (4108315) | 4108315..4108542 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN26_RS20145 (4108719) | 4108719..4108970 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN26_RS20150 (4109245) | 4109245..4110051 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN26_RS20160 (4110336) | 4110336..4111094 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN26_RS20165 (4111359) | 4111359..4111904 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN26_RS20170 (4111980) | 4111980..4113497 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |