MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP047544 Location: 879650..890975 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250 Replicon: chromosome
Accession: NZ_CP047544 Location: 879650..890975 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN29_RS04245 (875096) | 875096..876194 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| DXN29_RS04250 (876204) | 876204..877721 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| DXN29_RS04255 (877797) | 877797..878342 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN29_RS04260 (878607) | 878607..879365 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN29_RS04270 (879650) | 879650..880456 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN29_RS04275 (880731) | 880731..880982 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN29_RS04280 (881159) | 881159..881386 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN29_RS04285 (881386) | 881386..881784 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN29_RS04290 (882590) | 882590..883126 | + | 537 | WP_001038506.1 | hypothetical protein | VF |
| DXN29_RS04295 (883173) | 883173..883805 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN29_RS04300 (884524) | 884524..885108 | + | 585 | WP_001244638.1 | hypothetical protein | VF |
| DXN29_RS04305 (885228) | 885228..887717 | + | 2490 | WP_000705483.1 | hypothetical protein | VF |
| DXN29_RS04310 (887758) | 887758..888501 | + | 744 | WP_000798504.1 | hypothetical protein | VF |
| DXN29_RS04315 (888498) | 888498..889574 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN29_RS04320 (889718) | 889718..890230 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN29_RS04325 (890217) | 890217..890975 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN29_RS04330 (891185) | 891185..892039 | - | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN29_RS04335 (892161) | 892161..892433 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN29_RS04340 (892464) | 892464..893693 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN29_RS04345 (893835) | 893835..894290 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN29_RS04350 (894394) | 894394..895257 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |