MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP047542 Location: 4108745..4119325 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10330 Replicon: chromosome
Accession: NZ_CP047542 Location: 4108745..4119325 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10330 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN30_RS20135 (4104685) | 4104685..4105140 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN30_RS20140 (4105282) | 4105282..4106511 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN30_RS20145 (4106542) | 4106542..4106814 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN30_RS20150 (4106936) | 4106936..4107790 | + | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN30_RS20155 (4108000) | 4108000..4108758 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN30_RS20160 (4108745) | 4108745..4109257 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN30_RS20165 (4109401) | 4109401..4110477 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN30_RS20170 (4110474) | 4110474..4111217 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| DXN30_RS20175 (4111258) | 4111258..4113747 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| DXN30_RS20180 (4113867) | 4113867..4114451 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| DXN30_RS20185 (4115170) | 4115170..4115802 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN30_RS20190 (4115849) | 4115849..4116385 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| DXN30_RS20195 (4117191) | 4117191..4117589 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN30_RS20200 (4117589) | 4117589..4117816 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN30_RS20205 (4117993) | 4117993..4118244 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN30_RS20210 (4118519) | 4118519..4119325 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN30_RS20220 (4119610) | 4119610..4120368 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN30_RS20225 (4120633) | 4120633..4121178 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN30_RS20230 (4121254) | 4121254..4122771 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |