MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP047535 Location: 679513..690838 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Replicon: chromosome
Accession: NZ_CP047535 Location: 679513..690838 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN08_RS03325 (674959) | 674959..676057 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| DXN08_RS03330 (676067) | 676067..677584 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| DXN08_RS03335 (677660) | 677660..678205 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN08_RS03340 (678470) | 678470..679228 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN08_RS03350 (679513) | 679513..680319 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN08_RS03355 (680594) | 680594..680845 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN08_RS03360 (681022) | 681022..681249 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN08_RS03365 (681249) | 681249..681647 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN08_RS03370 (682453) | 682453..682989 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| DXN08_RS03375 (683036) | 683036..683668 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN08_RS03380 (684387) | 684387..684971 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| DXN08_RS03385 (685091) | 685091..687580 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| DXN08_RS03390 (687621) | 687621..688364 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| DXN08_RS03395 (688361) | 688361..689437 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN08_RS03400 (689581) | 689581..690093 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN08_RS03405 (690080) | 690080..690838 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN08_RS03410 (691048) | 691048..691914 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| DXN08_RS03415 (692036) | 692036..692308 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN08_RS03420 (692339) | 692339..693568 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN08_RS03425 (693710) | 693710..694165 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN08_RS03430 (694269) | 694269..695132 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |