MGE detailed information
MGE type: Genomic_island MGE length: 10581 bp
Accession: NZ_CP047527 Location: 4108832..4119412 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10648 Replicon: chromosome
Accession: NZ_CP047527 Location: 4108832..4119412 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10648 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN11_RS20130 (4104772) | 4104772..4105227 | + | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN11_RS20135 (4105369) | 4105369..4106598 | + | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN11_RS20140 (4106629) | 4106629..4106901 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN11_RS20145 (4107023) | 4107023..4107877 | + | 855 | WP_000503685.1 | nickel/cobalt efflux protein RcnA | - |
| DXN11_RS20150 (4108087) | 4108087..4108845 | - | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN11_RS20155 (4108832) | 4108832..4109344 | - | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN11_RS20160 (4109488) | 4109488..4110564 | - | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN11_RS20165 (4110561) | 4110561..4111304 | - | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| DXN11_RS20170 (4111345) | 4111345..4113834 | - | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| DXN11_RS20175 (4113954) | 4113954..4114538 | - | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| DXN11_RS20180 (4115257) | 4115257..4115889 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN11_RS20185 (4115936) | 4115936..4116472 | - | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| DXN11_RS20190 (4117278) | 4117278..4117676 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN11_RS20195 (4117676) | 4117676..4117903 | - | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN11_RS20200 (4118080) | 4118080..4118331 | + | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN11_RS20205 (4118606) | 4118606..4119412 | + | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN11_RS20215 (4119697) | 4119697..4120455 | - | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN11_RS20220 (4120720) | 4120720..4121265 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN11_RS20225 (4121341) | 4121341..4122858 | - | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.002 |