MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_CP047525 Location: 879809..891134 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077 Replicon: chromosome
Accession: NZ_CP047525 Location: 879809..891134 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN14_RS04255 (875255) | 875255..876353 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| DXN14_RS04260 (876363) | 876363..877880 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| DXN14_RS04265 (877956) | 877956..878501 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| DXN14_RS04270 (878766) | 878766..879524 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| DXN14_RS04280 (879809) | 879809..880615 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| DXN14_RS04285 (880890) | 880890..881141 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| DXN14_RS04290 (881318) | 881318..881545 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| DXN14_RS04295 (881545) | 881545..881943 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| DXN14_RS04300 (882749) | 882749..883285 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| DXN14_RS04305 (883332) | 883332..883964 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| DXN14_RS04310 (884683) | 884683..885267 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| DXN14_RS04315 (885387) | 885387..887876 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| DXN14_RS04320 (887917) | 887917..888660 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| DXN14_RS04325 (888657) | 888657..889733 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| DXN14_RS04330 (889877) | 889877..890389 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| DXN14_RS04335 (890376) | 890376..891134 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| DXN14_RS04340 (891344) | 891344..892204 | - | 861 | WP_000503684.1 | nickel/cobalt efflux protein RcnA | - |
| DXN14_RS04345 (892326) | 892326..892598 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| DXN14_RS04350 (892629) | 892629..893858 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| DXN14_RS04355 (894000) | 894000..894455 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| DXN14_RS04360 (894559) | 894559..895422 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |