MGE detailed information
MGE type: Genomic_island MGE length: 31868 bp
Accession: NZ_CP047127 Location: 2965953..2997820 Organism: Escherichia coli K-12 Replicon: chromosome
Accession: NZ_CP047127 Location: 2965953..2997820 Organism: Escherichia coli K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRF62_RS14160 () | 2962137..2963405 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| GRF62_RS14165 () | 2963425..2964402 | - | 978 | WP_033801603.1 | carbon starvation induced protein CsiD | - |
| GRF62_RS14170 () | 2964738..2966990 | - | 2253 | Protein_2746 | hypothetical protein | - |
| GRF62_RS14185 () | 2968376..2969745 | + | 1370 | Protein_2747 | DUF5507 domain-containing protein | - |
| GRF62_RS14190 () | 2970109..2970318 | + | 210 | WP_072097107.1 | recombinase family protein | - |
| GRF62_RS14195 () | 2970473..2970592 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| GRF62_RS14200 () | 2970657..2975237 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| GRF62_RS14205 () | 2975601..2975930 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| GRF62_RS14210 () | 2975951..2976268 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| GRF62_RS14215 () | 2976306..2976506 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| GRF62_RS14220 () | 2976515..2976997 | - | 483 | WP_001407480.1 | RadC family protein | - |
| GRF62_RS14225 () | 2977006..2977464 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| GRF62_RS14230 () | 2977567..2977790 | - | 224 | Protein_2756 | DUF905 family protein | - |
| GRF62_RS14235 () | 2978362..2980058 | - | 1697 | Protein_2757 | hypothetical protein | - |
| GRF62_RS14240 () | 2980200..2981209 | + | 1010 | Protein_2758 | arsenic transporter | - |
| GRF62_RS14245 () | 2981222..2981536 | + | 315 | WP_000065803.1 | arsenate reductase | - |
| GRF62_RS14250 () | 2981761..2982228 | - | 468 | WP_000702495.1 | hypothetical protein | - |
| GRF62_RS14255 () | 2982252..2982695 | - | 444 | WP_000824222.1 | hypothetical protein | - |
| GRF62_RS14260 () | 2982695..2982931 | - | 237 | WP_001144029.1 | hypothetical protein | - |
| GRF62_RS14265 () | 2982972..2983673 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| GRF62_RS14270 () | 2983890..2984711 | - | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| GRF62_RS14275 () | 2984803..2985666 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| GRF62_RS14280 () | 2986021..2986392 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| GRF62_RS14285 () | 2986385..2987458 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| GRF62_RS14290 () | 2987600..2987863 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| GRF62_RS14295 () | 2988223..2989839 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| GRF62_RS14300 () | 2989836..2992025 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| GRF62_RS14305 () | 2992203..2992829 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| GRF62_RS14310 () | 2993007..2994389 | - | 1383 | WP_159172255.1 | DUF3987 domain-containing protein | - |
| GRF62_RS14315 () | 2994518..2994730 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| GRF62_RS14320 () | 2994774..2995730 | + | 957 | WP_000510827.1 | hypothetical protein | - |
| GRF62_RS14325 () | 2995974..2997215 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| GRF62_RS14335 () | 2997996..2998478 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| GRF62_RS14340 () | 2998649..2999086 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| GRF62_RS14345 () | 2999076..2999366 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| GRF62_RS14350 () | 2999428..2999769 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| GRF62_RS14355 () | 2999918..3001579 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| GRF62_RS14360 () | 3001665..3002543 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |