MGE detailed information
MGE type: Prophage MGE length: 28385 bp
Accession: NZ_CP045741 Location: 3271084..3299468 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Accession: NZ_CP045741 Location: 3271084..3299468 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHR40_RS15615 () | 3267333..3269759 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| GHR40_RS15620 () | 3269958..3270263 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| GHR40_RS15625 () | 3270371..3271081 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| GHR40_RS15630 () | 3271084..3271644 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| GHR40_RS15635 () | 3271679..3272020 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| GHR40_RS15640 () | 3272155..3272481 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| GHR40_RS15645 () | 3272687..3273901 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| GHR40_RS15650 () | 3273913..3274932 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| GHR40_RS15655 () | 3274990..3275100 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| GHR40_RS15660 () | 3275120..3276277 | - | 1158 | Protein_3034 | tyrosine-type recombinase/integrase | - |
| GHR40_RS15665 () | 3276291..3276986 | - | 696 | Protein_3035 | IS3-like element IS2 family transposase | - |
| GHR40_RS15670 () | 3276983..3277750 | - | 768 | Protein_3036 | exonuclease | - |
| GHR40_RS15675 () | 3277843..3278034 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| GHR40_RS15680 () | 3278031..3278219 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| GHR40_RS15690 () | 3278787..3279005 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| GHR40_RS15695 () | 3279165..3279320 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| GHR40_RS15700 () | 3279487..3279894 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| GHR40_RS15705 () | 3279978..3280208 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| GHR40_RS15710 () | 3280192..3280470 | + | 279 | Protein_3043 | hypothetical protein | - |
| GHR40_RS15715 () | 3280505..3280654 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| GHR40_RS15720 () | 3281091..3281423 | - | 333 | WP_001301033.1 | protein FlxA | - |
| GHR40_RS15725 () | 3281626..3281931 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| GHR40_RS15730 () | 3281956..3282195 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| GHR40_RS15735 () | 3282195..3282482 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| GHR40_RS15740 () | 3282554..3282709 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| GHR40_RS15745 () | 3282926..3283177 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| GHR40_RS15750 () | 3283244..3283522 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| GHR40_RS15755 () | 3283524..3284573 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| GHR40_RS15760 () | 3284587..3285339 | + | 753 | WP_001047135.1 | antitermination protein | - |
| GHR40_RS15765 () | 3285617..3285706 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| GHR40_RS15770 () | 3285761..3285973 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| GHR40_RS15775 () | 3286274..3286488 | + | 215 | Protein_3056 | cold shock-like protein CspB | - |
| GHR40_RS15780 () | 3287242..3287457 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| GHR40_RS15785 () | 3287462..3287773 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| GHR40_RS15790 () | 3287770..3288303 | + | 534 | WP_001092971.1 | lysozyme | - |
| GHR40_RS15795 () | 3288300..3288797 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| GHR40_RS15800 () | 3289160..3289372 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| GHR40_RS15805 () | 3289383..3289571 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| GHR40_RS15810 () | 3289574..3289639 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| GHR40_RS15815 () | 3289718..3289873 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| GHR40_RS15820 () | 3290083..3290215 | + | 133 | Protein_3065 | addiction module toxin, GnsA/GnsB family | - |
| GHR40_RS15825 () | 3290365..3290773 | - | 409 | Protein_3066 | DUF1398 domain-containing protein | - |
| GHR40_RS15830 () | 3290831..3291064 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| GHR40_RS15835 () | 3291453..3292022 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| GHR40_RS15840 () | 3291973..3292935 | + | 963 | WP_001027733.1 | phage tail protein | - |
| GHR40_RS15845 () | 3292935..3293510 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| GHR40_RS15850 () | 3293608..3294198 | - | 591 | WP_000078177.1 | recombinase family protein | - |
| GHR40_RS15855 () | 3294515..3294748 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| GHR40_RS15860 () | 3294817..3294930 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| GHR40_RS15865 () | 3295451..3296818 | + | 1368 | Protein_3074 | MHS family MFS transporter | - |
| GHR40_RS15870 () | 3296907..3298367 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| GHR40_RS15875 () | 3298402..3298605 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| GHR40_RS15880 () | 3298782..3299468 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| GHR40_RS15885 () | 3299557..3300303 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| GHR40_RS15890 () | 3300440..3302485 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| GHR40_RS15895 () | 3302529..3303047 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| GHR40_RS15900 () | 3303323..3303715 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.01 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.007 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.01 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.006 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.01 |