MGE detailed information
MGE type: Genomic_island MGE length: 32156 bp
Accession: NZ_CP045741 Location: 2145946..2178101 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Accession: NZ_CP045741 Location: 2145946..2178101 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHR40_RS10210 () | 2140961..2142409 | - | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| GHR40_RS10215 () | 2142432..2143700 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| GHR40_RS10220 () | 2143720..2144697 | - | 978 | WP_033801603.1 | carbon starvation induced protein CsiD | - |
| GHR40_RS23405 () | 2145033..2147281 | - | 2249 | Protein_1975 | hypothetical protein | - |
| GHR40_RS10245 () | 2148666..2150029 | + | 1364 | Protein_1976 | DUF5507 domain-containing protein | - |
| GHR40_RS10250 () | 2150393..2150602 | + | 210 | WP_072097107.1 | recombinase family protein | - |
| GHR40_RS10255 () | 2150757..2150876 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| GHR40_RS10260 () | 2150941..2155521 | + | 4581 | WP_010723187.1 | adhesin-like autotransporter YpjA/EhaD | - |
| GHR40_RS10265 () | 2155885..2156214 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| GHR40_RS10270 () | 2156235..2156552 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| GHR40_RS10275 () | 2156590..2156790 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| GHR40_RS10280 () | 2156799..2157281 | - | 483 | WP_001407480.1 | RadC family protein | - |
| GHR40_RS10285 () | 2157290..2157748 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| GHR40_RS10290 () | 2157851..2158074 | - | 224 | Protein_1985 | DUF905 family protein | - |
| GHR40_RS10295 () | 2158646..2160340 | - | 1695 | Protein_1986 | hypothetical protein | - |
| GHR40_RS10300 () | 2160482..2161491 | + | 1010 | Protein_1987 | arsenic transporter | - |
| GHR40_RS10305 () | 2161504..2161818 | + | 315 | WP_000065803.1 | arsenate reductase | - |
| GHR40_RS10310 () | 2162043..2162510 | - | 468 | WP_000702495.1 | hypothetical protein | - |
| GHR40_RS10315 () | 2162534..2162977 | - | 444 | WP_000824222.1 | hypothetical protein | - |
| GHR40_RS10320 () | 2162977..2163213 | - | 237 | WP_001144029.1 | hypothetical protein | - |
| GHR40_RS10325 () | 2163254..2163955 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| GHR40_RS10330 () | 2164172..2164993 | - | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| GHR40_RS10335 () | 2165085..2165948 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| GHR40_RS10340 () | 2166303..2166674 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| GHR40_RS10345 () | 2166667..2167740 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| GHR40_RS10350 () | 2167882..2168145 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| GHR40_RS10355 () | 2168505..2170121 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| GHR40_RS10360 () | 2170118..2172307 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| GHR40_RS10365 () | 2172485..2173111 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| GHR40_RS10370 () | 2173261..2174670 | - | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| GHR40_RS10375 () | 2174799..2175011 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| GHR40_RS10380 () | 2175055..2176011 | + | 957 | WP_000510827.1 | hypothetical protein | - |
| GHR40_RS10385 () | 2176255..2177496 | - | 1242 | WP_000101723.1 | integrase | - |
| GHR40_RS10395 () | 2178277..2178759 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| GHR40_RS10400 () | 2178930..2179367 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| GHR40_RS10405 () | 2179357..2179647 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| GHR40_RS10410 () | 2179709..2180050 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| GHR40_RS10415 () | 2180199..2181860 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| GHR40_RS10420 () | 2181946..2182824 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |