MGE detailed information
MGE type: Conjugative plasmid MGE length: 88229 bp
Accession: NZ_CP044137 Location: 1..88229 Organism: Escherichia coli O157 strain AR-0430 Replicon: plasmid pAR-0430-1
Accession: NZ_CP044137 Location: 1..88229 Organism: Escherichia coli O157 strain AR-0430 Replicon: plasmid pAR-0430-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V42_RS00010 () | 52..1605 | + | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| F4V42_RS00015 () | 1618..2715 | + | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| F4V42_RS00020 () | 2733..3347 | + | 615 | WP_000959785.1 | hypothetical protein | VF |
| F4V42_RS00025 () | 3357..3917 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| F4V42_RS00030 () | 3902..4558 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| F4V42_RS00035 () | 4558..5968 | + | 1411 | Protein_6 | hypothetical protein | VF |
| F4V42_RS00060 () | 7287..8441 | + | 1155 | WP_001139957.1 | integrase | - |
| F4V42_RS00065 () | 8592..9416 | + | 825 | WP_001238939.1 | hypothetical protein | - |
| F4V42_RS00070 () | 9501..10703 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| F4V42_RS00075 () | 10763..11347 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| F4V42_RS00080 () | 11742..12200 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| F4V42_RS00085 () | 12197..13015 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| F4V42_RS00090 () | 13012..14160 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| F4V42_RS00095 () | 14157..14447 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| F4V42_RS00100 () | 14462..15013 | + | 552 | WP_000014583.1 | Phospholipase D | VF |
| F4V42_RS00105 () | 15103..18870 | + | 3768 | WP_001141529.1 | DNA primase | - |
| F4V42_RS00110 () | 18888..19235 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| F4V42_RS00115 () | 19232..19924 | + | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| F4V42_RS00120 () | 19935..20918 | + | 984 | WP_001191877.1 | hypothetical protein | VF |
| F4V42_RS00125 () | 20921..22210 | + | 1290 | WP_001272005.1 | conjugal transfer protein TraO | - |
| F4V42_RS00130 () | 22210..22914 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| F4V42_RS00135 () | 22914..23441 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| F4V42_RS00140 () | 23492..23896 | + | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| F4V42_RS00145 () | 23960..24148 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| F4V42_RS00150 () | 24132..24932 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| F4V42_RS00155 () | 25022..28066 | + | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| F4V42_RS00160 () | 28066..28680 | + | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| F4V42_RS00165 () | 28647..29849 | + | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| F4V42_RS00170 () | 29878..30462 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| F4V42_RS00175 () | 30559..32721 | + | 2163 | WP_000698351.1 | DotA/TraY family protein | - |
| F4V42_RS00180 () | 32786..33447 | + | 662 | Protein_31 | plasmid IncI1-type surface exclusion protein ExcA | - |
| F4V42_RS00185 () | 33519..33728 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| F4V42_RS29895 () | 34120..34296 | + | 177 | WP_001054904.1 | hypothetical protein | - |
| F4V42_RS00190 () | 34361..34657 | - | 297 | WP_001275298.1 | hypothetical protein | - |
| F4V42_RS29900 () | 35068..35208 | + | 141 | WP_000880644.1 | hypothetical protein | - |
| F4V42_RS00195 () | 35280..35432 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - () | 35482..35544 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 35482..35544 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 35482..35544 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 35482..35544 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| F4V42_RS00200 () | 35724..36932 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| F4V42_RS00205 () | 36951..38021 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| F4V42_RS00210 () | 38014..40305 | + | 2292 | WP_001289276.1 | hypothetical protein | - |
| F4V42_RS00215 () | 40342..43041 | - | 2700 | WP_010891268.1 | Protein TraI | Relaxase |
| F4V42_RS00220 () | 43052..43384 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| F4V42_RS00225 () | 43618..43941 | + | 324 | WP_151120032.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| F4V42_RS00230 () | 44038..44885 | - | 848 | Protein_43 | DUF4942 domain-containing protein | - |
| F4V42_RS00240 () | 45233..45430 | + | 198 | WP_151120034.1 | hypothetical protein | - |
| F4V42_RS00245 () | 45464..45715 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| F4V42_RS00250 () | 45746..45991 | - | 246 | WP_001260884.1 | hypothetical protein | - |
| F4V42_RS00255 () | 45991..46881 | - | 891 | WP_000038332.1 | Recombination-promoting nuclease RpnA | VF |
| F4V42_RS00260 () | 46946..47211 | - | 266 | Protein_48 | hypothetical protein | - |
| F4V42_RS00265 () | 47305..47739 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| F4V42_RS00270 () | 48028..48327 | + | 300 | WP_001348082.1 | hypothetical protein | - |
| F4V42_RS00275 () | 48466..48965 | - | 500 | Protein_51 | antirestriction protein ArdA | - |
| F4V42_RS00285 () | 49428..50024 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| F4V42_RS00290 () | 50021..50739 | - | 719 | Protein_53 | plasmid SOS inhibition protein A | - |
| F4V42_RS00295 () | 50736..51170 | - | 435 | WP_000845904.1 | conjugation system SOS inhibitor PsiB | - |
| F4V42_RS00300 () | 51225..53183 | - | 1959 | WP_001145462.1 | ParB/RepB/Spo0J family partition protein | - |
| F4V42_RS00305 () | 53242..53475 | - | 234 | WP_000005985.1 | DUF905 family protein | - |
| F4V42_RS00310 () | 53533..54060 | - | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| F4V42_RS00330 () | 54830..55021 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| F4V42_RS00335 () | 55018..55440 | - | 423 | WP_000271763.1 | DUF1380 family protein | - |
| F4V42_RS00340 () | 55487..55789 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| F4V42_RS29905 () | 56330..57106 | - | 777 | WP_024135924.1 | hypothetical protein | - |
| F4V42_RS00355 () | 57157..57591 | - | 435 | WP_000274493.1 | DUF1380 family protein | - |
| F4V42_RS00360 () | 57605..57826 | - | 222 | WP_001104893.1 | hypothetical protein | - |
| F4V42_RS00365 () | 57827..58510 | - | 684 | WP_000086121.1 | DNA methylase | - |
| F4V42_RS00370 () | 58586..58897 | - | 312 | WP_014640311.1 | hypothetical protein | - |
| F4V42_RS00375 () | 58894..59796 | - | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| F4V42_RS00385 () | 60214..60462 | + | 249 | WP_000618111.1 | DinI-like family protein | - |
| F4V42_RS00390 () | 60459..60896 | + | 438 | WP_000109072.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| F4V42_RS00395 () | 60896..62170 | + | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| F4V42_RS00400 () | 62172..62588 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| F4V42_RS00405 () | 62581..63561 | - | 981 | WP_000688519.1 | plasmid segregation protein ParM | - |
| F4V42_RS00410 () | 63975..64283 | - | 309 | WP_000048808.1 | hypothetical protein | - |
| F4V42_RS00415 () | 64370..65014 | - | 645 | WP_001144036.1 | ParA family protein | - |
| F4V42_RS00420 () | 65194..65982 | - | 789 | WP_000016498.1 | site-specific integrase | - |
| F4V42_RS00425 () | 65979..66668 | - | 690 | WP_000796232.1 | hypothetical protein | - |
| F4V42_RS00430 () | 66661..66945 | - | 285 | WP_001331078.1 | hypothetical protein | - |
| F4V42_RS00435 () | 67603..67860 | + | 258 | WP_000371885.1 | hypothetical protein | - |
| F4V42_RS00440 () | 67860..68450 | + | 591 | WP_000194573.1 | hypothetical protein | - |
| F4V42_RS00445 () | 68468..68815 | - | 348 | WP_000142441.1 | hypothetical protein | - |
| F4V42_RS00450 () | 68944..69279 | + | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| F4V42_RS00455 () | 69296..70399 | - | 1104 | WP_040028050.1 | colicin transporter | - |
| F4V42_RS00465 () | 71259..71576 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| F4V42_RS00470 () | 71573..72106 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| F4V42_RS00475 () | 72200..73345 | - | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| F4V42_RS00480 () | 73741..73929 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| F4V42_RS00485 () | 73939..75138 | + | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| F4V42_RS00490 () | 75302..75514 | - | 213 | WP_072743077.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| F4V42_RS00495 () | 75511..75780 | - | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| F4V42_RS29910 () | 75835..75993 | - | 159 | WP_000841008.1 | hypothetical protein | - |
| F4V42_RS00510 () | 76689..77720 | - | 1032 | WP_000907874.1 | replication initiation protein | - |
| F4V42_RS00525 () | 78693..78956 | + | 264 | WP_001324596.1 | ash family protein | - |
| F4V42_RS00530 () | 78874..79161 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| F4V42_RS00540 () | 79603..80136 | + | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| F4V42_RS00550 () | 80390..81073 | + | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| F4V42_RS00555 () | 81087..81653 | + | 567 | WP_000776428.1 | hypothetical protein | - |
| F4V42_RS00565 () | 81921..82175 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| F4V42_RS00570 () | 82218..82670 | + | 453 | WP_000008893.1 | hypothetical protein | - |
| F4V42_RS00580 () | 83344..84410 | + | 1067 | Protein_98 | hypothetical protein | VF |
| F4V42_RS00585 () | 84410..84847 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| F4V42_RS00590 () | 84861..86543 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| F4V42_RS00595 () | 86536..87831 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli | Conjugative plasmid | TA10119, TA30466 | NC_025198 | 1..92339 | 0.004 |