MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP043203 Location: 2220211..2253672 Organism: Escherichia coli O16:H48 strain PG20180058 Replicon: chromosome
Accession: NZ_CP043203 Location: 2220211..2253672 Organism: Escherichia coli O16:H48 strain PG20180058 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA09_RS10690 () | 2216110..2217330 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| FYA09_RS10695 () | 2217455..2218150 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| FYA09_RS10700 () | 2218103..2219395 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| FYA09_RS10705 () | 2219554..2220168 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| FYA09_RS10710 () | 2220211..2221065 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| FYA09_RS10715 () | 2221067..2221684 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| FYA09_RS10720 () | 2221695..2224118 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA09_RS10725 () | 2224179..2226605 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA09_RS10730 () | 2226804..2227109 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| FYA09_RS10735 () | 2227217..2227927 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| FYA09_RS10740 () | 2227930..2228490 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FYA09_RS10745 () | 2228525..2228866 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FYA09_RS10750 () | 2229001..2229327 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| FYA09_RS10755 () | 2229533..2230747 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FYA09_RS10760 () | 2230759..2231778 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FYA09_RS10770 () | 2231966..2233123 | - | 1158 | Protein_2097 | Putative defective protein IntQ ; Integrase | Integrase |
| FYA09_RS10775 () | 2233137..2233832 | - | 696 | Protein_2098 | IS3 family transposase IS2 | Transposase |
| FYA09_RS10780 () | 2233829..2234596 | - | 768 | Protein_2099 | exonuclease | - |
| FYA09_RS10785 () | 2234689..2234880 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FYA09_RS10790 () | 2234877..2235065 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FYA09_RS10800 () | 2235633..2235851 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| FYA09_RS10805 () | 2236011..2236166 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FYA09_RS10810 () | 2236333..2236740 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FYA09_RS10815 () | 2236824..2237054 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FYA09_RS10820 () | 2237038..2237316 | + | 279 | Protein_2106 | hypothetical protein | - |
| FYA09_RS10825 () | 2237351..2237500 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| FYA09_RS10830 () | 2237937..2238269 | - | 333 | WP_001301033.1 | protein FlxA | - |
| FYA09_RS10835 () | 2238472..2238777 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| FYA09_RS10840 () | 2238802..2239041 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FYA09_RS10845 () | 2239041..2239328 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FYA09_RS10850 () | 2239400..2239555 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FYA09_RS10855 () | 2239772..2240023 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| FYA09_RS10860 () | 2240090..2240368 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| FYA09_RS10865 () | 2240370..2241419 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FYA09_RS10870 () | 2241433..2242185 | + | 753 | WP_001047135.1 | antitermination protein | - |
| FYA09_RS10875 () | 2242463..2242552 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| FYA09_RS10880 () | 2242607..2242819 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FYA09_RS10885 () | 2243120..2243335 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FYA09_RS23350 () | 2243699..2243869 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FYA09_RS10890 () | 2244089..2244304 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FYA09_RS10895 () | 2244309..2244620 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| FYA09_RS10900 () | 2244617..2245150 | + | 534 | WP_001092971.1 | lysozyme | - |
| FYA09_RS10905 () | 2245147..2245644 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FYA09_RS10910 () | 2246007..2246219 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FYA09_RS10915 () | 2246230..2246418 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| FYA09_RS10920 () | 2246421..2246486 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| FYA09_RS10925 () | 2246565..2246720 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| FYA09_RS10930 () | 2246892..2247065 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FYA09_RS10935 () | 2247217..2247627 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FYA09_RS10940 () | 2247685..2247918 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FYA09_RS10945 () | 2248307..2248876 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| FYA09_RS10950 () | 2248827..2249789 | + | 963 | WP_001027733.1 | phage tail protein | - |
| FYA09_RS10955 () | 2249789..2250364 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| FYA09_RS10960 () | 2250462..2251052 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FYA09_RS10965 () | 2251369..2251602 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FYA09_RS10970 () | 2251671..2251784 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FYA09_RS10975 () | 2252305..2253672 | + | 1368 | Protein_2138 | MHS family MFS transporter | - |
| FYA09_RS10980 () | 2253761..2255221 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FYA09_RS10985 () | 2255256..2255459 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FYA09_RS10990 () | 2255636..2256322 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FYA09_RS10995 () | 2256411..2257157 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |