MGE detailed information
MGE type: Prophage MGE length: 41138 bp
Accession: NZ_CP038857 Location: 2238467..2279604 Organism: Escherichia coli strain PigCaeca_2 Replicon: chromosome
Accession: NZ_CP038857 Location: 2238467..2279604 Organism: Escherichia coli strain PigCaeca_2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5285_RS10815 () | 2234366..2235586 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| E5285_RS10820 () | 2235711..2236406 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| E5285_RS10825 () | 2236359..2237651 | - | 1293 | WP_071593517.1 | voltage-gated ClC-type chloride channel ClcB | - |
| E5285_RS10830 () | 2237810..2238424 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| E5285_RS10835 () | 2238467..2239321 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| E5285_RS10840 () | 2239323..2239940 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| E5285_RS10845 () | 2239951..2242374 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| E5285_RS10850 () | 2242435..2244861 | - | 2427 | WP_135927298.1 | dimethyl sulfoxide reductase subunit A | - |
| E5285_RS10855 () | 2245060..2245365 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| E5285_RS10860 () | 2245473..2246183 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| E5285_RS10865 () | 2246186..2246746 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| E5285_RS10870 () | 2246781..2247122 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| E5285_RS10875 () | 2247257..2247583 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| E5285_RS10880 () | 2247789..2249003 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| E5285_RS10885 () | 2249015..2250034 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| E5285_RS10895 () | 2250222..2251502 | - | 1281 | WP_135927299.1 | Putative defective protein IntQ ; Integrase | Integrase |
| E5285_RS10900 () | 2251537..2251788 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| E5285_RS10905 () | 2251861..2254332 | - | 2472 | WP_021570798.1 | exonuclease | - |
| E5285_RS10910 () | 2254425..2254616 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| E5285_RS10915 () | 2254613..2254801 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| E5285_RS10920 () | 2254903..2255214 | + | 312 | WP_001326992.1 | class I SAM-dependent methyltransferase | - |
| E5285_RS24510 () | 2255825..2256112 | + | 288 | Protein_2114 | hypothetical protein | - |
| E5285_RS10935 () | 2256881..2258194 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| E5285_RS10945 () | 2259578..2260806 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| E5285_RS10950 () | 2261228..2261560 | - | 333 | WP_135927300.1 | FlxA-like family protein | - |
| E5285_RS10955 () | 2261763..2262068 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| E5285_RS10960 () | 2262093..2262332 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| E5285_RS10965 () | 2262332..2262619 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| E5285_RS10970 () | 2262691..2262846 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| E5285_RS10975 () | 2263063..2263314 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| E5285_RS10980 () | 2263381..2263659 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| E5285_RS10985 () | 2263661..2264710 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| E5285_RS10990 () | 2264724..2265476 | + | 753 | WP_001047135.1 | antitermination protein | - |
| E5285_RS10995 () | 2265754..2265843 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| E5285_RS11000 () | 2265898..2266110 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| E5285_RS11005 () | 2266411..2266626 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| E5285_RS24630 () | 2266990..2267160 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| E5285_RS11010 () | 2267380..2267595 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| E5285_RS11015 () | 2267600..2267911 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| E5285_RS11020 () | 2267908..2268441 | + | 534 | WP_001092971.1 | lysozyme | - |
| E5285_RS11025 () | 2268438..2268935 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| E5285_RS11030 () | 2269298..2269510 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| E5285_RS11035 () | 2269521..2269709 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| E5285_RS11040 () | 2269712..2269777 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| E5285_RS11045 () | 2269857..2270012 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| E5285_RS11050 () | 2270184..2270357 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| E5285_RS11055 () | 2270509..2270919 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| E5285_RS11060 () | 2270977..2271210 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| E5285_RS11065 () | 2271599..2272144 | + | 546 | WP_021575143.1 | DNA-packaging protein | - |
| E5285_RS11075 () | 2272432..2273073 | + | 642 | Protein_2143 | tail fiber protein | - |
| E5285_RS11080 () | 2273073..2273648 | + | 576 | WP_000885634.1 | tail fiber assembly protein | - |
| E5285_RS11085 () | 2273746..2274336 | - | 591 | WP_000086531.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| E5285_RS11090 () | 2274653..2274886 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| E5285_RS11095 () | 2274955..2275068 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| E5285_RS11100 () | 2275671..2276954 | + | 1284 | Protein_2148 | MHS family MFS transporter YdfJ | - |
| E5285_RS11105 () | 2277043..2278503 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| E5285_RS11110 () | 2278538..2278741 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| E5285_RS11115 () | 2278918..2279604 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| E5285_RS11120 () | 2279693..2280439 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| E5285_RS11125 () | 2280576..2282621 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| E5285_RS11130 () | 2282665..2283183 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| E5285_RS11135 () | 2283459..2283851 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.01 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.01 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.01 |