MGE detailed information
MGE type: Conjugative plasmid MGE length: 149304 bp
Accession: NZ_CP037912 Location: 1..149304 Organism: Escherichia coli strain YSP8-1 Replicon: plasmid pYSP8-1-CTX-M-14
Accession: NZ_CP037912 Location: 1..149304 Organism: Escherichia coli strain YSP8-1 Replicon: plasmid pYSP8-1-CTX-M-14
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1J56_RS24580 () | 1489..2304 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| E1J56_RS24585 () | 2391..2633 | + | 243 | Protein_2 | phosphoglucosamine mutase | - |
| E1J56_RS24595 () | 2869..4362 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| E1J56_RS24600 () | 4573..4797 | - | 225 | WP_136655519.1 | hypothetical protein | - |
| E1J56_RS24605 () | 4794..5531 | - | 738 | WP_052259184.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| E1J56_RS24610 () | 5924..6829 | + | 906 | WP_052259183.1 | rRNA adenine N-6-methyltransferase | ARG |
| E1J56_RS24615 () | 6980..7159 | + | 180 | Protein_7 | winged helix-turn-helix domain-containing protein | - |
| E1J56_RS24620 () | 7224..7928 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| E1J56_RS24625 () | 8223..9437 | + | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| E1J56_RS24630 () | 9471..10874 | - | 1404 | WP_072135327.1 | DNA cytosine methyltransferase | - |
| E1J56_RS24635 () | 10998..11270 | + | 273 | Protein_11 | IS1 family transposase | - |
| E1J56_RS24640 () | 11527..12224 | + | 698 | Protein_12 | IS1 family transposase IS1R | Transposase |
| E1J56_RS24645 () | 12392..13183 | - | 792 | WP_032491824.1 | Streptomycin 3''-adenylyltransferase | ARG |
| E1J56_RS24650 () | 13332..14345 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| E1J56_RS25690 () | 14548..14784 | + | 237 | Protein_15 | DUF3330 domain-containing protein | - |
| E1J56_RS24660 () | 14837..15541 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| E1J56_RS24665 () | 15602..15871 | + | 270 | Protein_17 | 2-keto-3-deoxygluconate permease | - |
| E1J56_RS24670 () | 15917..16669 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| E1J56_RS24675 () | 17274..17558 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| E1J56_RS24680 () | 17558..17833 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| E1J56_RS24685 () | 17939..18232 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| E1J56_RS24690 () | 18267..18395 | - | 129 | Protein_22 | IS481 family transposase | - |
| E1J56_RS24695 () | 18428..19598 | - | 1171 | Protein_23 | hypothetical protein | - |
| E1J56_RS24710 () | 21427..21734 | + | 308 | Protein_25 | type II toxin-antitoxin system ParD family antitoxin | - |
| E1J56_RS24720 () | 22077..22259 | + | 183 | WP_042344623.1 | hypothetical protein | - |
| E1J56_RS24725 () | 22380..23120 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| E1J56_RS24730 () | 23405..24382 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| E1J56_RS24740 () | 25128..25451 | + | 324 | Protein_29 | IS21 family transposase IS21 | Transposase |
| E1J56_RS25810 () | 25453..25557 | + | 105 | Protein_30 | AAA family ATPase | - |
| E1J56_RS24750 () | 25618..26131 | + | 514 | Protein_31 | DUF4113 domain-containing protein | - |
| E1J56_RS24755 () | 26311..27008 | - | 698 | Protein_32 | IS1 family transposase IS1S | Transposase |
| E1J56_RS24765 () | 27364..28278 | + | 915 | WP_072644633.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| E1J56_RS24770 () | 28278..29105 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| E1J56_RS24775 () | 29102..29959 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| E1J56_RS24780 () | 29956..30813 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| E1J56_RS24790 () | 31302..31715 | + | 414 | Protein_37 | phosphopyruvate hydratase | - |
| E1J56_RS24800 () | 32056..32436 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| E1J56_RS24805 () | 32816..34009 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| E1J56_RS24810 () | 34145..35869 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| E1J56_RS24815 () | 35870..36817 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| E1J56_RS24820 () | 36817..38559 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| E1J56_RS24825 () | 38556..39833 | + | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| E1J56_RS24830 () | 39915..42116 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| E1J56_RS24835 () | 42496..43193 | + | 698 | Protein_45 | IS1 family transposase IS1S | Transposase |
| E1J56_RS24840 () | 43447..44469 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| E1J56_RS24845 () | 44454..46019 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| E1J56_RS24850 () | 46094..46510 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| E1J56_RS24855 () | 46507..46737 | - | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| E1J56_RS24860 () | 47084..50878 | + | 3795 | WP_001144732.1 | hypothetical protein | - |
| E1J56_RS24865 () | 50923..51339 | - | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| E1J56_RS24870 () | 51336..51566 | - | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| E1J56_RS24875 () | 51831..52331 | + | 501 | WP_000528931.1 | hypothetical protein | - |
| E1J56_RS24880 () | 52344..53117 | + | 774 | WP_000905949.1 | hypothetical protein | - |
| E1J56_RS24885 () | 53284..54417 | + | 1134 | WP_001542067.1 | DUF3800 domain-containing protein | - |
| E1J56_RS24890 () | 54451..54963 | - | 513 | WP_000151784.1 | hypothetical protein | - |
| E1J56_RS24895 () | 55531..55749 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| E1J56_RS24900 () | 55751..56056 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| E1J56_RS24905 () | 56057..56863 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| E1J56_RS24910 () | 57637..58392 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| E1J56_RS24915 () | 58980..60146 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| E1J56_RS24920 () | 60146..61117 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| E1J56_RS24935 () | 61984..62886 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| E1J56_RS24940 () | 62890..63194 | + | 305 | Protein_64 | hypothetical protein | - |
| E1J56_RS24945 () | 63271..63954 | + | 684 | WP_000086185.1 | DNA methylase | - |
| E1J56_RS24950 () | 63955..64176 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| E1J56_RS24955 () | 64190..64624 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| E1J56_RS24960 () | 64675..65451 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| E1J56_RS24970 () | 65991..66293 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| E1J56_RS24975 () | 66340..66762 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| E1J56_RS24980 () | 66759..66950 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| E1J56_RS24995 () | 67988..68218 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| E1J56_RS25000 () | 68270..69631 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| E1J56_RS25005 () | 69678..70241 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| E1J56_RS25030 () | 71084..71611 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| E1J56_RS25035 () | 71669..71902 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| E1J56_RS25040 () | 71963..73986 | + | 2024 | Protein_77 | ParB/RepB/Spo0J family partition protein | - |
| E1J56_RS25045 () | 74055..74489 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| E1J56_RS25050 () | 74486..75205 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 75217..75441 | + | 225 | NuclAT_0 | - | - |
| - () | 75217..75441 | + | 225 | NuclAT_0 | - | - |
| - () | 75217..75441 | + | 225 | NuclAT_0 | - | - |
| - () | 75217..75441 | + | 225 | NuclAT_0 | - | - |
| E1J56_RS25695 () | 75226..75405 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - () | 75374..75439 | + | 66 | - | - | Antitoxin Detail |
| E1J56_RS25055 () | 75485..75643 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| E1J56_RS25815 () | 75881..76258 | - | 378 | Protein_82 | hypothetical protein | - |
| E1J56_RS25075 () | 76558..76854 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| E1J56_RS25080 () | 76965..77786 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| E1J56_RS25085 () | 78083..78685 | - | 603 | WP_000243713.1 | hypothetical protein | VF |
| E1J56_RS25095 () | 79008..79391 | + | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| E1J56_RS25100 () | 79585..80256 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| E1J56_RS25105 () | 80393..80620 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| E1J56_RS25110 () | 80653..81012 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| E1J56_RS25115 () | 81027..81338 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| E1J56_RS25120 () | 81360..81926 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| E1J56_RS25125 () | 81913..82641 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| E1J56_RS25130 () | 82641..84092 | + | 1452 | WP_000146675.1 | conjugal transfer protein TraB | - |
| E1J56_RS25135 () | 84061..84648 | + | 588 | WP_001444176.1 | conjugal transfer protein TraP | - |
| E1J56_RS25140 () | 84587..84955 | + | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| E1J56_RS25145 () | 84952..85467 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| E1J56_RS25150 () | 85602..85823 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| E1J56_RS25155 () | 85816..86229 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| E1J56_RS25160 () | 86222..86695 | + | 474 | WP_000549568.1 | hypothetical protein | - |
| E1J56_RS25165 () | 86775..86993 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| E1J56_RS25170 () | 87021..87368 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| E1J56_RS25175 () | 87494..90124 | + | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| E1J56_RS25180 () | 90121..90507 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| E1J56_RS25185 () | 90504..91136 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| E1J56_RS25190 () | 91133..92125 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| E1J56_RS25195 () | 92155..92460 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| E1J56_RS25200 () | 92469..93107 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| E1J56_RS25205 () | 93104..94954 | + | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| E1J56_RS25210 () | 94981..95238 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| E1J56_RS25215 () | 95231..95974 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| E1J56_RS25220 () | 95988..96332 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| E1J56_RS25225 () | 96451..96735 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| E1J56_RS25230 () | 96722..97267 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E1J56_RS25235 () | 97197..97544 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| E1J56_RS25240 () | 97492..97917 | + | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| E1J56_RS25245 () | 97904..99277 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| E1J56_RS25250 () | 99274..102096 | + | 2823 | WP_136655520.1 | conjugal transfer mating pair stabilization protein TraG | - |
| E1J56_RS25255 () | 102112..102597 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| E1J56_RS25260 () | 102646..103377 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| E1J56_RS25265 () | 103580..104317 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| E1J56_RS25270 () | 104368..106575 | + | 2208 | WP_001617742.1 | type IV conjugative transfer system coupling protein TraD | - |
| E1J56_RS25275 () | 106575..111845 | + | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| E1J56_RS25280 () | 111865..112611 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| E1J56_RS25285 () | 112670..113530 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| E1J56_RS25290 () | 113633..114193 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| E1J56_RS25295 () | 114322..114534 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| E1J56_RS25300 () | 114779..115240 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| E1J56_RS25305 () | 115286..115495 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| E1J56_RS25310 () | 115533..116123 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| E1J56_RS25315 () | 116363..116617 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| E1J56_RS25325 () | 116855..116929 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| E1J56_RS25330 () | 116922..117779 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| E1J56_RS25335 () | 117996..118673 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| E1J56_RS25340 () | 118673..119020 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| E1J56_RS25345 () | 119040..120611 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| E1J56_RS25355 () | 121425..122078 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| E1J56_RS25360 () | 122171..122428 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| E1J56_RS25365 () | 122361..122762 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| E1J56_RS25370 () | 123145..123555 | - | 411 | WP_136655521.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| E1J56_RS25375 () | 123810..123998 | - | 189 | WP_136655522.1 | hypothetical protein | - |
| E1J56_RS25380 () | 124072..124776 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| E1J56_RS25390 () | 125177..125934 | + | 758 | Protein_142 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | - |
| E1J56_RS25395 () | 126982..127173 | + | 192 | WP_136655523.1 | hypothetical protein | - |
| E1J56_RS25705 () | 128434..128595 | + | 162 | WP_169050822.1 | hypothetical protein | - |
| E1J56_RS25410 () | 129184..129498 | - | 315 | WP_136655525.1 | hypothetical protein | - |
| E1J56_RS25415 () | 129734..130024 | + | 291 | Protein_146 | transposase | - |
| E1J56_RS25420 () | 130274..131149 | + | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| E1J56_RS25425 () | 131184..132152 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| E1J56_RS25430 () | 132209..132781 | - | 573 | Protein_149 | IS1380 family transposase ISEcp1 | Transposase |
| E1J56_RS25440 () | 132967..134013 | + | 1047 | Protein_150 | Methyl-accepting chemotaxis protein McpQ | VF |
| E1J56_RS25445 () | 134202..134411 | - | 210 | Protein_151 | dihydropteroate synthase | - |
| E1J56_RS25450 () | 134405..134752 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| E1J56_RS25460 () | 134944..136203 | - | 1260 | WP_001256776.1 | Bicyclomycin resistance protein | ARG |
| E1J56_RS25465 () | 136470..137024 | - | 555 | WP_032488579.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib3 | - |
| E1J56_RS25470 () | 137204..137884 | + | 681 | Protein_155 | class 1 integron integrase IntI1 | - |
| E1J56_RS25475 () | 137949..138653 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| E1J56_RS25485 () | 138709..141702 | + | 2994 | WP_104774284.1 | Tn3 family transposase ISEc63 | Transposase |
| E1J56_RS25490 () | 141737..142060 | + | 324 | Protein_158 | conjugal transfer protein | - |
| E1J56_RS25500 () | 142305..142421 | + | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| E1J56_RS25505 () | 142437..144356 | + | 1920 | WP_136655526.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| E1J56_RS25510 () | 144468..146564 | - | 2097 | WP_000422420.1 | hypothetical protein | - |
| E1J56_RS25515 () | 146580..146954 | - | 375 | Protein_162 | Tn3 family transposase TnpR_Tn3 | Transposase |
| E1J56_RS25520 () | 147019..147723 | + | 705 | WP_032199621.1 | IS6-like element IS26 family transposase | - |
| E1J56_RS25525 () | 147778..148461 | + | 684 | Protein_164 | AAA family ATPase | - |
| E1J56_RS25530 () | 148448..149299 | + | 852 | WP_000240536.1 | replication protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|