MGE detailed information
MGE type: Genomic_island MGE length: 19387 bp
Accession: NZ_CP034658 Location: 234818..254204 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Accession: NZ_CP034658 Location: 234818..254204 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH78_RS01045 (229969) | 229969..230883 | - | 915 | WP_000648572.1 | DNA-binding transcriptional regulator YafC | - |
| EKH78_RS01050 (231124) | 231124..231924 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| EKH78_RS01055 (231955) | 231955..232551 | + | 597 | Protein_206 | methyltransferase domain-containing protein | - |
| EKH78_RS01060 (232599) | 232599..233957 | - | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| EKH78_RS01065 (234029) | 234029..234784 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| EKH78_RS01070 (234818) | 234818..235540 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| EKH78_RS01075 (235537) | 235537..236004 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| EKH78_RS01080 (236069) | 236069..236800 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| EKH78_RS01090 (237337) | 237337..238122 | + | 786 | WP_001086141.1 | lipoprotein | - |
| EKH78_RS01095 (238259) | 238259..238738 | - | 480 | WP_001236645.1 | protein YkfM | - |
| EKH78_RS01100 (238748) | 238748..239104 | - | 357 | Protein_214 | hypothetical protein | - |
| EKH78_RS01105 (239102) | 239102..239380 | + | 279 | Protein_215 | ISAs1 family transposase | - |
| EKH78_RS01110 (239421) | 239421..240191 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| EKH78_RS01115 (240372) | 240372..240818 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| EKH78_RS01120 (240861) | 240861..243305 | - | 2445 | WP_000973083.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| EKH78_RS01125 (243545) | 243545..244123 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| EKH78_RS01130 (244329) | 244329..245096 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| EKH78_RS01135 (245067) | 245067..245807 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| EKH78_RS01140 (245963) | 245963..246241 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| EKH78_RS01145 (246244) | 246244..246504 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| EKH78_RS01150 (246714) | 246714..247463 | + | 750 | WP_000056849.1 | hypothetical protein | VF |
| EKH78_RS01155 (247639) | 247639..248136 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| EKH78_RS01160 (248360) | 248360..250072 | - | 1713 | Protein_226 | hypothetical protein | VF |
| EKH78_RS01165 (250044) | 250044..250829 | + | 786 | WP_000207552.1 | hypothetical protein | VF |
| EKH78_RS01170 (250900) | 250900..251955 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| EKH78_RS01175 (252007) | 252007..252300 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| EKH78_RS01180 (252303) | 252303..252701 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| EKH78_RS01185 (252711) | 252711..253163 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| EKH78_RS01190 (253481) | 253481..253687 | + | 207 | Protein_232 | RtcB family protein | - |
| EKH78_RS01195 (253683) | 253683..254204 | + | 522 | Protein_233 | peptide chain release factor H | - |
| EKH78_RS01200 (254261) | 254261..255718 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| EKH78_RS01205 (255979) | 255979..256437 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (257033) | 257033..257113 | + | 81 | NuclAT_12 | - | - |
| - (257033) | 257033..257113 | + | 81 | NuclAT_12 | - | - |
| - (257033) | 257033..257113 | + | 81 | NuclAT_12 | - | - |
| - (257033) | 257033..257113 | + | 81 | NuclAT_12 | - | - |
| EKH78_RS01210 (256529) | 256529..257773 | + | 1245 | WP_000189532.1 | esterase FrsA | - |
| EKH78_RS01215 (257831) | 257831..258232 | + | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA28996, TA28997 | NC_020518 | 223678..243064 | 0 |