MGE detailed information
MGE type: Conjugative plasmid MGE length: 54993 bp
Accession: NZ_CP034080 Location: 1..54993 Organism: Pseudomonas syringae pv. pisi str. PP1 Replicon: plasmid pPP1-2
Accession: NZ_CP034080 Location: 1..54993 Organism: Pseudomonas syringae pv. pisi str. PP1 Replicon: plasmid pPP1-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N032_RS27580 () | 1..1314 | + | 1314 | WP_032495804.1 | replication initiation protein | - |
| N032_RS27585 () | 1540..1833 | + | 294 | WP_003348560.1 | HU family DNA-binding protein | - |
| N032_RS27590 () | 1920..2105 | + | 186 | WP_003348562.1 | hypothetical protein | Antitoxin Detail |
| N032_RS27595 () | 2105..2398 | + | 294 | WP_003348565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N032_RS27600 () | 2538..3065 | + | 528 | WP_003348567.1 | hypothetical protein | - |
| N032_RS27605 () | 3062..3349 | - | 288 | Protein_5 | Mobilization protein A | Relaxase |
| N032_RS27610 () | 3350..3631 | + | 282 | Protein_6 | S24 family peptidase | - |
| N032_RS27615 () | 3609..3872 | + | 264 | WP_080270888.1 | DNA-directed DNA polymerase | - |
| N032_RS27620 () | 4086..4499 | - | 414 | WP_003348573.1 | DUF3757 domain-containing protein | - |
| N032_RS27625 () | 4924..5964 | + | 1041 | WP_080270889.1 | DUF4113 domain-containing protein | - |
| N032_RS27630 () | 6118..6405 | + | 288 | WP_074454502.1 | hypothetical protein | - |
| N032_RS27635 () | 6499..6909 | + | 411 | WP_005782529.1 | hypothetical protein | - |
| N032_RS27640 () | 7247..7447 | + | 201 | WP_003348581.1 | hypothetical protein | - |
| N032_RS27645 () | 7560..8210 | + | 651 | WP_003348583.1 | AAA family ATPase | - |
| N032_RS27650 () | 8200..8487 | + | 288 | WP_003348585.1 | hypothetical protein | - |
| N032_RS27655 () | 8699..9340 | + | 642 | WP_110768561.1 | SOS response-associated peptidase | - |
| N032_RS27660 () | 9528..10103 | + | 576 | WP_003348590.1 | hypothetical protein | - |
| N032_RS27665 () | 11041..12003 | - | 963 | WP_024650326.1 | IS91 family transposase ISMno24 | Transposase |
| N032_RS27670 () | 12044..12406 | - | 363 | WP_124733765.1 | hypothetical protein | - |
| N032_RS27675 () | 12646..12894 | + | 249 | WP_004662018.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N032_RS27680 () | 12907..13257 | + | 351 | WP_003348598.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N032_RS27685 () | 13889..19627 | + | 5739 | WP_024650327.1 | hypothetical protein | - |
| N032_RS27690 () | 19828..20100 | - | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N032_RS27695 () | 20090..20275 | - | 186 | WP_005730485.1 | hypothetical protein | Antitoxin Detail |
| N032_RS27700 () | 20326..20604 | - | 279 | WP_003320513.1 | hypothetical protein | - |
| N032_RS27715 () | 21262..21588 | - | 327 | WP_003319696.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| N032_RS27720 () | 21585..21809 | - | 225 | WP_003319697.1 | antitoxin MazE family protein | Antitoxin Detail |
| N032_RS27725 () | 22299..22931 | + | 633 | WP_003381804.1 | ParA family protein | - |
| N032_RS27730 () | 22967..23221 | + | 255 | WP_003381801.1 | hypothetical protein | - |
| N032_RS27735 () | 23646..24311 | - | 666 | WP_024647998.1 | LexA family transcriptional regulator | - |
| N032_RS27740 () | 24399..24629 | + | 231 | WP_010215521.1 | helix-turn-helix domain-containing protein | - |
| N032_RS27745 () | 24981..25679 | + | 699 | WP_024650160.1 | Type IV secretion system protein virB1 | VF |
| N032_RS27750 () | 25679..26014 | + | 336 | WP_024650161.1 | hypothetical protein | - |
| N032_RS27755 () | 26027..26427 | + | 401 | Protein_33 | VirB3 family type IV secretion system protein | - |
| N032_RS27760 () | 26363..28915 | + | 2553 | WP_024650163.1 | VirB4 family type IV secretion system protein | - |
| N032_RS27765 () | 28912..29598 | + | 687 | WP_024650164.1 | P-type DNA transfer protein VirB5 | - |
| N032_RS27770 () | 29631..29984 | + | 354 | WP_024650165.1 | hypothetical protein | - |
| N032_RS27775 () | 29995..30927 | + | 933 | WP_024650166.1 | type IV secretion system protein | - |
| N032_RS27780 () | 30995..31309 | + | 315 | WP_080271125.1 | conjugal transfer protein | - |
| N032_RS27785 () | 31347..32135 | + | 789 | WP_024650167.1 | type IV secretion system protein | - |
| N032_RS27790 () | 32125..32934 | + | 810 | WP_024650168.1 | P-type conjugative transfer protein VirB9 | - |
| N032_RS27795 () | 32921..34270 | + | 1350 | WP_024650169.1 | Type IV secretion system protein virB10 | VF |
| N032_RS27800 () | 34280..35335 | + | 1056 | WP_024650170.1 | Type IV secretion system protein VirB11 | VF |
| N032_RS27805 () | 35349..35735 | + | 387 | WP_003347401.1 | hypothetical protein | - |
| N032_RS27810 () | 35720..36076 | + | 357 | WP_024650171.1 | hypothetical protein | - |
| N032_RS27815 () | 36353..36976 | + | 624 | WP_003347396.1 | glycoside hydrolase family 25 protein | - |
| N032_RS27825 () | 37311..39731 | + | 2421 | WP_116894210.1 | ATP-binding protein | - |
| N032_RS27830 () | 39843..40076 | + | 234 | WP_003347392.1 | hypothetical protein | - |
| N032_RS27835 () | 40076..41749 | + | 1674 | WP_024650172.1 | type IV secretory system conjugative DNA transfer family protein | - |
| N032_RS27840 () | 41790..42152 | + | 363 | WP_024650173.1 | Killer protein | - |
| N032_RS27845 () | 42180..44345 | + | 2166 | WP_110818236.1 | type IA DNA topoisomerase | - |
| N032_RS27850 () | 44374..44658 | + | 285 | WP_003347380.1 | hypothetical protein | - |
| N032_RS27855 () | 44686..45258 | + | 573 | WP_110818237.1 | single-stranded DNA-binding protein | - |
| N032_RS27860 () | 45599..46318 | + | 720 | WP_003347375.1 | hypothetical protein | - |
| N032_RS27865 () | 46315..46887 | + | 573 | WP_024647985.1 | hypothetical protein | - |
| N032_RS27870 () | 46902..47291 | - | 390 | WP_020304529.1 | hypothetical protein | - |
| N032_RS27875 () | 47658..48008 | + | 351 | WP_003347368.1 | hypothetical protein | Relaxase |
| N032_RS27885 () | 49729..51738 | + | 2010 | WP_110768565.1 | hypothetical protein | - |
| N032_RS27890 () | 51995..52660 | + | 666 | WP_024647937.1 | hypothetical protein | - |
| N032_RS27895 () | 53035..53370 | + | 336 | WP_024647938.1 | GntR family transcriptional regulator | - |
| N032_RS27900 () | 53450..54352 | + | 903 | WP_003347355.1 | hypothetical protein | - |
| N032_RS27905 () | 54369..54596 | + | 228 | WP_024647939.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|