MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 114923 bp
Accession: NZ_CP032450 Location: 1..114923 Organism: Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 Replicon: plasmid pSDU1-USMARC-69838
Accession: NZ_CP032450 Location: 1..114923 Organism: Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 Replicon: plasmid pSDU1-USMARC-69838
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DZA56_RS25190 () | 401..952 | - | 552 | WP_001020646.1 | hypothetical protein | - |
| DZA56_RS25195 () | 949..1557 | - | 609 | WP_000891157.1 | hypothetical protein | - |
| DZA56_RS25200 () | 1568..2101 | - | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| DZA56_RS25205 () | 2101..2373 | - | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| DZA56_RS25210 () | 3089..3451 | + | 363 | WP_000683483.1 | hypothetical protein | - |
| DZA56_RS25215 () | 3489..7103 | - | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| DZA56_RS25220 () | 7116..8549 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| DZA56_RS25225 () | 8551..9591 | - | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| DZA56_RS25230 () | 9702..11213 | - | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| DZA56_RS25240 () | 11500..12540 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| DZA56_RS25245 () | 12685..13560 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| DZA56_RS26160 () | 13710..13841 | + | 132 | WP_014342220.1 | hypothetical protein | - |
| DZA56_RS25250 () | 13887..14378 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| DZA56_RS25255 () | 14375..15244 | - | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| DZA56_RS25260 () | 15249..16259 | - | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
| DZA56_RS25265 () | 16262..16798 | - | 537 | WP_000949433.1 | hypothetical protein | - |
| DZA56_RS25280 () | 17079..17783 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DZA56_RS26165 () | 17760..17981 | + | 222 | WP_162919539.1 | hypothetical protein | - |
| DZA56_RS25285 () | 18123..18827 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DZA56_RS25295 () | 18876..18986 | - | 111 | Protein_20 | recombinase family protein | - |
| DZA56_RS25300 () | 19193..19933 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| DZA56_RS25310 () | 20588..21076 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| DZA56_RS25315 () | 21335..22450 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| DZA56_RS25320 () | 22536..22952 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| DZA56_RS25325 () | 23136..23471 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| DZA56_RS25330 () | 23528..24094 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| DZA56_RS25335 () | 24126..25068 | - | 943 | Protein_27 | Rpn family recombination-promoting nuclease/putative transposase | - |
| DZA56_RS25340 () | 25461..26081 | + | 621 | WP_000864788.1 | ParA family protein | - |
| DZA56_RS25345 () | 26133..26363 | + | 231 | WP_000051066.1 | partitioning protein | - |
| DZA56_RS25360 () | 27002..27355 | - | 354 | WP_001675596.1 | hypothetical protein | - |
| DZA56_RS25365 () | 27492..27938 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| DZA56_RS25370 () | 27978..28814 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| DZA56_RS25380 () | 30050..30301 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| DZA56_RS25385 () | 30291..30572 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DZA56_RS25390 () | 30718..31041 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| DZA56_RS25395 () | 31086..31331 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| DZA56_RS25400 () | 31321..31536 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| DZA56_RS25405 () | 31629..31958 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| DZA56_RS25410 () | 32001..32180 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| DZA56_RS25415 () | 32202..32399 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| DZA56_RS25420 () | 32412..32684 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| DZA56_RS25430 () | 33010..33555 | + | 546 | WP_000757691.1 | hypothetical protein | - |
| DZA56_RS25435 () | 33558..34739 | + | 1182 | WP_000539536.1 | relaxase/mobilization nuclease domain-containing protein | - |
| DZA56_RS25440 () | 35085..35603 | + | 519 | WP_001675951.1 | ActX protein | - |
| DZA56_RS25445 () | 35533..35745 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| DZA56_RS25450 () | 35778..36425 | + | 648 | WP_000953526.1 | lytic transglycosylase domain-containing protein | - |
| DZA56_RS25455 () | 36403..36699 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| DZA56_RS25460 () | 36718..39471 | + | 2754 | WP_001675613.1 | VirB3 family type IV secretion system protein | - |
| DZA56_RS25465 () | 39482..40240 | + | 759 | WP_000744198.1 | pilus assembly protein | - |
| DZA56_RS25470 () | 40241..40468 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| DZA56_RS25475 () | 40478..41611 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| DZA56_RS25480 () | 41856..42569 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| DZA56_RS25485 () | 42574..43503 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| DZA56_RS25490 () | 43500..44705 | + | 1206 | WP_000139139.1 | TrbI/VirB10 family protein | - |
| DZA56_RS25495 () | 44707..45737 | + | 1031 | Protein_55 | P-type DNA transfer ATPase VirB11 | - |
| DZA56_RS25500 () | 45740..47575 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| DZA56_RS25505 () | 47572..47985 | + | 414 | WP_001575522.1 | hypothetical protein | - |
| DZA56_RS25510 () | 47982..48284 | + | 303 | WP_015059377.1 | KikA protein | - |
| DZA56_RS26170 () | 48445..48591 | + | 147 | WP_000382583.1 | hypothetical protein | - |
| DZA56_RS25515 () | 48595..49170 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| DZA56_RS25520 () | 49175..51328 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| DZA56_RS25525 () | 51325..51531 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| DZA56_RS25530 () | 51547..51981 | + | 435 | WP_001293135.1 | H-NS histone family protein | - |
| DZA56_RS25535 () | 52644..53129 | + | 486 | WP_001281416.1 | Abi family protein | - |
| DZA56_RS25540 () | 53288..54415 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| DZA56_RS25545 () | 55493..56137 | - | 645 | WP_000203397.1 | recombinase family protein | - |
| DZA56_RS25550 () | 56211..60467 | + | 4257 | Protein_67 | conjugative transfer relaxase/helicase TraI | - |
| DZA56_RS25555 () | 60487..61227 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| DZA56_RS25560 () | 61282..61845 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| DZA56_RS25565 () | 61962..62414 | + | 453 | WP_000477656.1 | hypothetical protein | - |
| DZA56_RS25570 () | 62580..63023 | + | 444 | Protein_71 | phospholipase | - |
| DZA56_RS25575 () | 63202..63468 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| DZA56_RS25585 () | 63716..63793 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| DZA56_RS25590 () | 63774..64655 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| DZA56_RS25600 () | 65450..65844 | - | 395 | Protein_75 | IS66 family transposase | - |
| DZA56_RS25605 () | 65874..66047 | - | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| DZA56_RS26175 () | 66202..66399 | - | 198 | WP_001675602.1 | transposase | - |
| DZA56_RS25615 () | 66694..67488 | - | 795 | WP_001575508.1 | hypothetical protein | - |
| DZA56_RS25620 () | 67524..68183 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| DZA56_RS25625 () | 69642..69914 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| DZA56_RS25630 () | 70150..70947 | + | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| DZA56_RS25635 () | 70975..71739 | + | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| DZA56_RS25640 () | 71726..72001 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| DZA56_RS25645 () | 72001..72714 | + | 714 | WP_000801115.1 | hypothetical protein | - |
| DZA56_RS25655 () | 72839..73423 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| DZA56_RS25660 () | 73496..73708 | + | 213 | WP_000063794.1 | hypothetical protein | - |
| DZA56_RS26180 () | 73969..74130 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| DZA56_RS25665 () | 74156..75004 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| DZA56_RS25680 () | 75574..76002 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DZA56_RS25685 () | 75999..76229 | - | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| DZA56_RS25690 () | 76974..77192 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DZA56_RS25695 () | 77194..77499 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DZA56_RS25700 () | 77501..77791 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| DZA56_RS25705 () | 77788..78309 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| DZA56_RS25710 () | 78344..79126 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| DZA56_RS25715 () | 79135..79847 | + | 713 | Protein_96 | EAL domain-containing protein | - |
| DZA56_RS25720 () | 79851..80360 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| DZA56_RS25725 () | 80354..80690 | + | 337 | Protein_98 | hypothetical protein | - |
| DZA56_RS25730 () | 80902..81462 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| DZA56_RS25735 () | 81529..81888 | - | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| DZA56_RS25740 () | 81945..82370 | + | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| DZA56_RS25745 () | 82497..83147 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| DZA56_RS25750 () | 83407..84132 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| DZA56_RS25755 () | 84413..86194 | - | 1782 | WP_001675599.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| DZA56_RS26185 () | 86246..86413 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| DZA56_RS25760 () | 86376..87143 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| DZA56_RS25765 () | 87317..87481 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| DZA56_RS25770 () | 87655..88548 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| DZA56_RS25775 () | 89155..90192 | + | 1038 | WP_001121398.1 | IS630 family transposase | - |
| DZA56_RS25780 () | 90381..91406 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| DZA56_RS25785 () | 91339..93003 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| DZA56_RS25790 () | 92987..93451 | - | 465 | Protein_112 | recombinase family protein | - |
| DZA56_RS25795 () | 93512..94216 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DZA56_RS25805 () | 94431..94928 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| DZA56_RS25810 () | 94931..95419 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| DZA56_RS25815 () | 95516..95851 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| DZA56_RS25820 () | 95866..96336 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| DZA56_RS25825 () | 96329..96700 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| DZA56_RS25830 () | 96711..96905 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| DZA56_RS26190 () | 96933..97124 | + | 192 | WP_014342197.1 | hypothetical protein | - |
| DZA56_RS25840 () | 97246..97794 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| DZA56_RS25845 () | 97957..98307 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DZA56_RS25850 () | 98312..98614 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| DZA56_RS25855 () | 98641..98934 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| DZA56_RS25860 () | 99022..99294 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| DZA56_RS25865 () | 99352..99879 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| DZA56_RS25870 () | 99896..100042 | - | 147 | WP_014342196.1 | hypothetical protein | - |
| DZA56_RS25875 () | 100110..100967 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| DZA56_RS25880 () | 100954..101184 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| DZA56_RS25885 () | 101184..101702 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| DZA56_RS25890 () | 101699..102145 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| DZA56_RS25895 () | 102145..102504 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| DZA56_RS25900 () | 102561..102989 | - | 429 | WP_000591074.1 | hypothetical protein | - |
| DZA56_RS25905 () | 103023..103883 | - | 861 | WP_000139698.1 | DsbA family protein | - |
| DZA56_RS25910 () | 103899..104858 | - | 960 | WP_000829616.1 | S49 family peptidase | - |
| DZA56_RS25915 () | 104858..105712 | - | 855 | WP_000539392.1 | hypothetical protein | - |
| DZA56_RS25920 () | 105717..106010 | - | 294 | WP_001370730.1 | hypothetical protein | - |
| DZA56_RS25925 () | 106021..106494 | - | 474 | WP_000057877.1 | hypothetical protein | - |
| DZA56_RS25930 () | 106591..107112 | - | 522 | WP_000805800.1 | hypothetical protein | - |
| DZA56_RS25935 () | 107115..107636 | - | 522 | WP_000393785.1 | hypothetical protein | - |
| DZA56_RS25940 () | 107641..108249 | - | 609 | WP_000849071.1 | hypothetical protein | - |
| DZA56_RS26195 () | 108246..108374 | - | 129 | WP_002210560.1 | hypothetical protein | - |
| DZA56_RS25945 () | 108518..109633 | + | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| DZA56_RS25950 () | 109651..110085 | + | 435 | WP_000883925.1 | hypothetical protein | - |
| DZA56_RS26200 () | 110172..110336 | - | 165 | WP_014342194.1 | hypothetical protein | - |
| DZA56_RS25965 () | 111122..112222 | - | 1101 | WP_000350011.1 | plasmid replication protein | - |
| DZA56_RS25970 () | 112207..112494 | - | 288 | WP_000127321.1 | hypothetical protein | - |
| DZA56_RS25975 () | 112499..113038 | - | 540 | WP_001447712.1 | hypothetical protein | - |
| DZA56_RS25980 () | 113537..114520 | + | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| DZA56_RS25985 () | 114537..114830 | + | 294 | WP_000919078.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|