MGE detailed information
MGE type: Mobilizable plasmid MGE length: 112422 bp
Accession: NZ_CP028576 Location: 1..112422 Organism: Escherichia coli strain WCHEC005784 Replicon: plasmid pCTXM15_005784
Accession: NZ_CP028576 Location: 1..112422 Organism: Escherichia coli strain WCHEC005784 Replicon: plasmid pCTXM15_005784
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBQ99_RS00020 () | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| DBQ99_RS00025 () | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| DBQ99_RS00030 () | 2124..2306 | - | 183 | WP_042065278.1 | hypothetical protein | - |
| DBQ99_RS00035 () | 2373..2534 | - | 162 | WP_001440647.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DBQ99_RS00040 () | 2650..2918 | - | 269 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
| DBQ99_RS00050 () | 3214..3954 | - | 741 | WP_029702141.1 | IS91 family transposase ISMno23 | Transposase |
| DBQ99_RS00055 () | 3994..4691 | - | 698 | Protein_6 | IS1 family transposase IS1R | Transposase |
| DBQ99_RS00065 () | 4746..5048 | + | 303 | Protein_7 | IS1380 family transposase ISEcp1 | Transposase |
| DBQ99_RS00070 () | 5304..6179 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| DBQ99_RS00075 () | 6226..6558 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| DBQ99_RS00080 () | 6572..6844 | + | 273 | Protein_10 | DUF4158 domain-containing protein | - |
| DBQ99_RS00085 () | 6905..7609 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DBQ99_RS26315 () | 7674..7952 | - | 279 | Protein_12 | pdcB | - |
| DBQ99_RS00100 () | 7980..8159 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| DBQ99_RS00105 () | 8164..8544 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| DBQ99_RS00110 () | 8544..8765 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DBQ99_RS00115 () | 8948..10504 | + | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| DBQ99_RS00120 () | 10501..11772 | + | 1272 | WP_023142242.1 | restriction endonuclease subunit S | - |
| DBQ99_RS00125 () | 11894..15010 | + | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| DBQ99_RS00135 () | 15224..15921 | + | 698 | Protein_19 | IS1 family transposase IS1G | Transposase |
| DBQ99_RS00140 () | 16058..16990 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| DBQ99_RS00145 () | 16994..17989 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| DBQ99_RS00150 () | 18697..18915 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DBQ99_RS00155 () | 18917..19222 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DBQ99_RS00160 () | 19223..20029 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| DBQ99_RS00170 () | 20806..21510 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DBQ99_RS00175 () | 21573..22067 | - | 495 | Protein_26 | IS4 family transposase IS10R | Transposase |
| DBQ99_RS00185 () | 22210..23070 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| DBQ99_RS26320 () | 23083..23187 | + | 105 | Protein_28 | tunicamycin resistance protein | - |
| DBQ99_RS00195 () | 23239..23943 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DBQ99_RS00200 () | 24242..25102 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| DBQ99_RS00205 () | 25252..25350 | - | 99 | Protein_31 | IS1 family transposase | - |
| DBQ99_RS00210 () | 25379..26689 | - | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| DBQ99_RS00220 () | 26974..27375 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| DBQ99_RS26050 () | 27308..27565 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| DBQ99_RS00225 () | 27658..28311 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| DBQ99_RS00240 () | 29252..30109 | - | 858 | WP_029702152.1 | incFII family plasmid replication initiator RepA | - |
| DBQ99_RS00245 () | 30102..30176 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| DBQ99_RS00255 () | 30412..30669 | - | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| DBQ99_RS00260 () | 30953..31159 | - | 207 | WP_032215358.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 31146..31207 | + | 62 | NuclAT_1 | - | - |
| - () | 31146..31207 | + | 62 | NuclAT_1 | - | - |
| - () | 31146..31207 | + | 62 | NuclAT_1 | - | - |
| - () | 31146..31207 | + | 62 | NuclAT_1 | - | - |
| DBQ99_RS26325 () | 31346..31612 | - | 267 | WP_087757657.1 | hypothetical protein | - |
| DBQ99_RS00275 () | 31987..32556 | - | 570 | WP_029702150.1 | DUF2726 domain-containing protein | - |
| DBQ99_RS00280 () | 32708..33334 | - | 627 | WP_029702149.1 | hypothetical protein | - |
| DBQ99_RS00285 () | 33746..33955 | - | 210 | WP_039023209.1 | hypothetical protein | - |
| DBQ99_RS00290 () | 34086..34646 | - | 561 | WP_001567328.1 | fertility inhibition protein FinO | - |
| DBQ99_RS00295 () | 34701..34937 | - | 237 | Protein_45 | conjugal transfer protein | - |
| DBQ99_RS00305 () | 35025..35528 | - | 504 | Protein_46 | conjugal transfer protein TraH | - |
| DBQ99_RS00310 () | 35515..35940 | - | 426 | WP_071594227.1 | F-type conjugal transfer protein TrbF | - |
| DBQ99_RS00315 () | 35888..36229 | - | 342 | WP_071594226.1 | P-type conjugative transfer protein TrbJ | - |
| DBQ99_RS00320 () | 36159..36704 | - | 546 | WP_000059832.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| DBQ99_RS00325 () | 36691..36975 | - | 285 | WP_000623730.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| DBQ99_RS00330 () | 37102..37440 | - | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| DBQ99_RS00335 () | 37456..38199 | - | 744 | WP_001462109.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| DBQ99_RS00340 () | 38192..38449 | - | 258 | WP_000864319.1 | conjugal transfer protein TrbE | - |
| DBQ99_RS00345 () | 38476..40263 | - | 1788 | WP_029976537.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| DBQ99_RS00350 () | 40574..40954 | - | 381 | WP_001462111.1 | hypothetical protein | - |
| DBQ99_RS00355 () | 40951..41589 | - | 639 | WP_001463034.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| DBQ99_RS00360 () | 41598..41903 | - | 306 | WP_000224412.1 | hypothetical protein | - |
| DBQ99_RS00365 () | 41933..42925 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| DBQ99_RS00370 () | 42922..43272 | - | 351 | Protein_59 | conjugal transfer protein TraW | - |
| DBQ99_RS00375 () | 43294..43431 | - | 138 | WP_001553834.1 | conjugal transfer protein TrbD | - |
| DBQ99_RS00380 () | 43418..44008 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| DBQ99_RS00385 () | 43998..45425 | - | 1428 | WP_001553836.1 | conjugal transfer protein TraB | - |
| DBQ99_RS00390 () | 45425..46129 | - | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| DBQ99_RS00395 () | 46140..46706 | - | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| DBQ99_RS00400 () | 46728..47039 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| DBQ99_RS00405 () | 47054..47419 | - | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| DBQ99_RS00410 () | 47462..47677 | - | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| DBQ99_RS00415 () | 47813..48460 | - | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| DBQ99_RS00420 () | 48651..49034 | - | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| DBQ99_RS00425 () | 49404..49976 | + | 573 | WP_000949660.1 | hypothetical protein | VF |
| DBQ99_RS00430 () | 50272..51093 | - | 822 | WP_001234465.1 | DUF945 domain-containing protein | - |
| DBQ99_RS00435 () | 51212..51499 | - | 288 | WP_000107242.1 | hypothetical protein | - |
| DBQ99_RS26330 () | 51524..51730 | - | 207 | WP_000275854.1 | hypothetical protein | - |
| DBQ99_RS00445 () | 52398..52556 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 52621..52819 | - | 199 | NuclAT_0 | - | - |
| - () | 52621..52819 | - | 199 | NuclAT_0 | - | - |
| - () | 52621..52819 | - | 199 | NuclAT_0 | - | - |
| - () | 52621..52819 | - | 199 | NuclAT_0 | - | - |
| DBQ99_RS00450 () | 52788..52893 | - | 106 | Protein_75 | plasmid SOS inhibition protein A | - |
| DBQ99_RS00455 () | 53048..53365 | + | 318 | Protein_76 | IS110 family transposase | - |
| DBQ99_RS00460 () | 53654..53905 | - | 252 | Protein_77 | iron-containing alcohol dehydrogenase | - |
| DBQ99_RS00465 () | 53990..54613 | - | 624 | WP_000912556.1 | potassium channel family protein | - |
| DBQ99_RS00470 () | 54629..55326 | - | 698 | Protein_79 | IS1 family transposase IS1S | Transposase |
| DBQ99_RS00480 () | 55383..55487 | + | 105 | Protein_80 | thiosulfate reductase cytochrome B subunit | - |
| DBQ99_RS00490 () | 55733..57127 | - | 1395 | WP_001037799.1 | carbohydrate porin | - |
| DBQ99_RS00495 () | 57322..58755 | - | 1434 | WP_024170639.1 | glycoside hydrolase family 32 protein | - |
| DBQ99_RS00500 () | 58752..60029 | - | 1278 | WP_001083369.1 | MFS transporter | - |
| DBQ99_RS00505 () | 60092..62218 | - | 2127 | WP_000253905.1 | alpha-galactosidase | - |
| DBQ99_RS00510 () | 62314..63324 | - | 1011 | WP_000053332.1 | substrate-binding domain-containing protein | - |
| DBQ99_RS00515 () | 63482..64240 | - | 759 | Protein_86 | site-specific integrase | - |
| DBQ99_RS00525 () | 64331..65559 | + | 1229 | WP_152924612.1 | IS3 family transposase IS2 | Transposase |
| DBQ99_RS00530 () | 65544..66113 | + | 570 | WP_089634947.1 | hypothetical protein | - |
| DBQ99_RS26335 () | 67214..67448 | - | 235 | Protein_89 | hypothetical protein | - |
| DBQ99_RS00545 () | 67474..68037 | - | 564 | WP_029702196.1 | class I SAM-dependent methyltransferase | - |
| DBQ99_RS00550 () | 68085..69446 | - | 1362 | WP_039023242.1 | DUF3560 domain-containing protein | - |
| DBQ99_RS00555 () | 69498..69728 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| DBQ99_RS26340 () | 70245..70778 | + | 534 | Protein_93 | hypothetical protein | - |
| DBQ99_RS00570 () | 70757..70948 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| DBQ99_RS00575 () | 70948..71409 | - | 462 | WP_051394489.1 | DUF1380 family protein | - |
| DBQ99_RS00580 () | 71409..71711 | - | 303 | WP_001436678.1 | antirestriction protein | - |
| DBQ99_RS26060 () | 72251..73027 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| DBQ99_RS00595 () | 73078..73512 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| DBQ99_RS00600 () | 73526..73747 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| DBQ99_RS00605 () | 73748..74431 | - | 684 | WP_000086185.1 | DNA methylase | - |
| DBQ99_RS00610 () | 74508..74812 | - | 305 | Protein_101 | hypothetical protein | - |
| DBQ99_RS00615 () | 74816..75718 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| DBQ99_RS00630 () | 76585..77556 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| DBQ99_RS00635 () | 77556..78722 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| DBQ99_RS00640 () | 79310..80065 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| DBQ99_RS00645 () | 80186..80890 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DBQ99_RS00650 () | 80943..82598 | + | 1656 | Protein_107 | Tn3 family transposase TnpA_Tn3 | Transposase |
| DBQ99_RS00655 () | 82663..83367 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DBQ99_RS00660 () | 83421..83861 | - | 441 | Protein_109 | CatB-related O-acetyltransferase | - |
| DBQ99_RS00665 () | 83999..84829 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| DBQ99_RS00670 () | 84960..85514 | - | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| DBQ99_RS00675 () | 85658..86362 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DBQ99_RS00680 () | 86427..87107 | - | 681 | Protein_113 | IS91 family transposase ISAzo26 | Transposase |
| DBQ99_RS00685 () | 87265..87738 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| DBQ99_RS00690 () | 87869..88657 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| DBQ99_RS00695 () | 88863..89210 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| DBQ99_RS00700 () | 89204..90043 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| DBQ99_RS00710 () | 90171..90374 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| DBQ99_RS00715 () | 90530..91735 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| DBQ99_RS00720 () | 91746..92051 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| DBQ99_RS26065 () | 92095..92160 | + | 66 | Protein_121 | EAL domain-containing protein | - |
| DBQ99_RS00730 () | 92278..93042 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| DBQ99_RS00745 () | 93535..94119 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| DBQ99_RS00750 () | 94119..95357 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| DBQ99_RS00755 () | 95354..96259 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| DBQ99_RS00765 () | 96381..97085 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DBQ99_RS00770 () | 97146..97322 | + | 177 | Protein_127 | replication protein C | - |
| DBQ99_RS00785 () | 97630..98445 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| DBQ99_RS00790 () | 98506..99309 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| DBQ99_RS00795 () | 99309..100145 | + | 837 | WP_000480972.1 | hypothetical protein | ARG |
| DBQ99_RS00800 () | 100199..100435 | + | 237 | WP_042005022.1 | hypothetical protein | - |
| DBQ99_RS00805 () | 100467..101093 | - | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| DBQ99_RS00810 () | 101199..102398 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| DBQ99_RS00815 () | 102430..103290 | - | 861 | WP_000493383.1 | EamA family transporter | - |
| DBQ99_RS00820 () | 103299..103805 | - | 507 | Protein_135 | transposase | - |
| DBQ99_RS00830 () | 103858..104562 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DBQ99_RS00840 () | 104626..105039 | + | 414 | Protein_137 | DDE-type integrase/transposase/recombinase | - |
| DBQ99_RS00845 () | 104989..105306 | - | 318 | WP_001513659.1 | hypothetical protein | - |
| DBQ99_RS00850 () | 105534..106514 | - | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| DBQ99_RS00860 () | 106758..108161 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| DBQ99_RS00865 () | 108148..109080 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| DBQ99_RS00870 () | 109189..109518 | - | 330 | Protein_142 | TOBE domain-containing protein | - |
| DBQ99_RS00875 () | 109534..110231 | - | 698 | Protein_143 | IS1 family transposase IS1R | Transposase |
| DBQ99_RS00885 () | 110289..110537 | + | 249 | Protein_144 | abortive infection family protein | - |
| DBQ99_RS00890 () | 110906..111637 | - | 732 | WP_001617898.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|