MGE detailed information
MGE type: Conjugative plasmid MGE length: 131463 bp
Accession: NZ_CP027357 Location: 1..131463 Organism: Escherichia coli strain 2013C-4991 Replicon: plasmid unnamed2
Accession: NZ_CP027357 Location: 1..131463 Organism: Escherichia coli strain 2013C-4991 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P55_RS29180 () | 1..289 | - | 289 | WP_199851680.1 | cation transporter | - |
| C6P55_RS29185 () | 341..763 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| C6P55_RS29190 () | 799..1074 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| C6P55_RS29195 () | 1088..1438 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| C6P55_RS29200 () | 1510..1944 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| C6P55_RS29220 () | 2946..3187 | + | 242 | Protein_5 | relaxase | - |
| C6P55_RS29225 () | 3219..3869 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| C6P55_RS29230 () | 3975..5174 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| C6P55_RS29235 () | 5206..6090 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| C6P55_RS29240 () | 6228..6635 | - | 408 | WP_001214976.1 | cysteine hydrolase | - |
| C6P55_RS29245 () | 6624..8375 | + | 1752 | Protein_10 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| C6P55_RS29265 () | 9178..9447 | + | 270 | WP_032072813.1 | prevent host death protein Phd antitoxin | Antitoxin Detail |
| C6P55_RS29270 () | 9444..9725 | + | 282 | WP_024170920.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6P55_RS29275 () | 9771..10619 | + | 849 | WP_032072812.1 | 3'-5' exonuclease | - |
| C6P55_RS29280 () | 10736..11218 | + | 483 | WP_001311056.1 | hypothetical protein | - |
| C6P55_RS29290 () | 11520..11867 | + | 348 | WP_000142450.1 | hypothetical protein | - |
| C6P55_RS31305 () | 11885..12046 | - | 162 | WP_000251882.1 | hypothetical protein | - |
| C6P55_RS29295 () | 12290..16111 | + | 3822 | WP_001683567.1 | hypothetical protein | - |
| C6P55_RS29300 () | 16643..16993 | + | 351 | WP_000493379.1 | hypothetical protein | - |
| C6P55_RS29305 () | 17037..17726 | + | 690 | WP_000796228.1 | hypothetical protein | - |
| C6P55_RS29310 () | 17723..18514 | + | 792 | WP_000016493.1 | site-specific integrase | - |
| C6P55_RS29315 () | 18692..19045 | + | 354 | WP_000864812.1 | colicin M immunity protein | - |
| C6P55_RS29320 () | 19095..19910 | - | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| C6P55_RS29330 () | 20154..20681 | + | 528 | WP_000203272.1 | colicin B immunity protein | - |
| C6P55_RS29335 () | 20699..20866 | - | 168 | Protein_24 | colicin-B | - |
| C6P55_RS29340 () | 21039..21320 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| C6P55_RS31100 () | 21784..22020 | + | 237 | WP_014640552.1 | colicin V immunity protein | - |
| C6P55_RS29350 () | 21998..22309 | + | 312 | WP_001259758.1 | colicin V | - |
| C6P55_RS29355 () | 22479..24593 | - | 2115 | WP_109045958.1 | peptidase domain-containing ABC transporter | - |
| C6P55_RS29360 () | 24568..25842 | - | 1275 | WP_000489607.1 | HlyD family secretion protein | - |
| C6P55_RS29370 () | 27894..28187 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| C6P55_RS29375 () | 28245..28444 | - | 200 | Protein_32 | lysis system i-spanin subunit Rz | - |
| C6P55_RS29385 () | 28998..30097 | + | 1100 | Protein_33 | IS481 family transposase ISKpn28 | Transposase |
| C6P55_RS29395 () | 31333..32448 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| C6P55_RS29400 () | 32588..36247 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| C6P55_RS29405 () | 36351..37580 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| C6P55_RS29410 () | 37665..38621 | + | 957 | WP_000271276.1 | Ferri-bacillibactin esterase BesA | VF |
| C6P55_RS29415 () | 38666..40842 | - | 2177 | Protein_38 | Ferrienterobactin receptor | VF |
| C6P55_RS29430 () | 41697..42730 | - | 1034 | Protein_39 | 3-deoxy-7-phosphoheptulonate synthase | - |
| C6P55_RS29440 () | 43289..43636 | - | 348 | WP_000142437.1 | hypothetical protein | - |
| C6P55_RS29450 () | 43938..44420 | - | 483 | WP_001311056.1 | hypothetical protein | - |
| C6P55_RS29455 () | 44537..45385 | - | 849 | WP_106912714.1 | 3'-5' exonuclease | - |
| C6P55_RS29460 () | 45431..45712 | - | 282 | WP_000969990.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6P55_RS29465 () | 45709..45978 | - | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| C6P55_RS29470 () | 46500..47736 | + | 1237 | Protein_45 | IS3 family transposase IS2 | Transposase |
| C6P55_RS29480 () | 48959..50152 | + | 1194 | WP_000450494.1 | GTP-binding protein | - |
| C6P55_RS29485 () | 50330..50479 | + | 150 | Protein_47 | IS3 family transposase IS2 | Transposase |
| C6P55_RS29490 () | 50789..52178 | + | 1390 | Protein_48 | ISNCY family transposase ISKpn21 | Transposase |
| C6P55_RS29495 () | 52256..52953 | - | 698 | Protein_49 | IS1 family transposase | - |
| C6P55_RS29505 () | 53010..53278 | + | 269 | Protein_50 | IS3 family transposase ISLad1 | Transposase |
| C6P55_RS29515 () | 54823..54981 | + | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| C6P55_RS29530 () | 56254..57207 | + | 954 | WP_000280980.1 | Protease 7 | VF |
| C6P55_RS29540 () | 57640..58749 | + | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| C6P55_RS29545 () | 58818..59720 | + | 903 | WP_001312822.1 | hypothetical protein | VF |
| C6P55_RS29550 () | 60094..60282 | + | 189 | WP_014640565.1 | hypothetical protein | - |
| C6P55_RS29555 () | 60403..61143 | + | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| C6P55_RS29560 () | 61428..62405 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| C6P55_RS29570 () | 63151..63474 | + | 324 | Protein_59 | IS21 family transposase IS21 | Transposase |
| C6P55_RS31310 () | 63476..63580 | + | 105 | Protein_60 | AAA family ATPase | - |
| C6P55_RS31315 () | 63641..64154 | + | 514 | Protein_61 | DUF4113 domain-containing protein | - |
| C6P55_RS29590 () | 64334..65031 | - | 698 | Protein_62 | IS1 family transposase | - |
| C6P55_RS29605 () | 65387..66301 | + | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| C6P55_RS29610 () | 66301..67128 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| C6P55_RS29615 () | 67125..67982 | + | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| C6P55_RS29620 () | 67979..68836 | + | 858 | WP_000968140.1 | Manganese transport system membrane protein MntB | ARG |
| C6P55_RS29625 () | 69070..69327 | - | 258 | Protein_67 | Tn3 family transposase | - |
| C6P55_RS29630 () | 69325..69456 | + | 132 | Protein_68 | phosphopyruvate hydratase | - |
| C6P55_RS29635 () | 69453..69680 | - | 228 | Protein_69 | malate dehydrogenase | - |
| C6P55_RS29645 () | 70120..70599 | - | 480 | WP_000190053.1 | hypothetical protein | - |
| C6P55_RS29650 () | 70717..71166 | + | 450 | WP_000238252.1 | hypothetical protein | - |
| C6P55_RS29655 () | 71783..73285 | + | 1503 | WP_000715078.1 | hypothetical protein | - |
| C6P55_RS29665 () | 73441..74126 | + | 686 | Protein_73 | IS1 family transposase | - |
| C6P55_RS29670 () | 74426..75592 | + | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| C6P55_RS29675 () | 75592..76563 | + | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| C6P55_RS31320 () | 77375..77713 | + | 339 | WP_001513511.1 | hypothetical protein | - |
| C6P55_RS29685 () | 77782..78114 | + | 333 | Protein_77 | hypothetical protein | - |
| C6P55_RS29695 () | 78168..78865 | + | 698 | Protein_78 | IS1 family transposase | - |
| C6P55_RS29700 () | 78918..79889 | - | 972 | WP_000082154.1 | IS110 family transposase ISEc32 | Transposase |
| C6P55_RS29710 () | 80414..80716 | + | 303 | WP_134092064.1 | antirestriction protein | - |
| C6P55_RS29715 () | 80716..81177 | + | 462 | WP_042007484.1 | DUF1380 family protein | - |
| C6P55_RS29720 () | 81177..81359 | + | 183 | WP_001027505.1 | hypothetical protein | - |
| C6P55_RS31325 () | 81347..81675 | - | 329 | Protein_83 | pilus assembly protein | - |
| C6P55_RS29740 () | 82353..82583 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| C6P55_RS29745 () | 82635..83996 | + | 1362 | WP_000170681.1 | DUF3560 domain-containing protein | - |
| C6P55_RS29750 () | 84042..84605 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| C6P55_RS29760 () | 84757..85023 | + | 267 | WP_072254135.1 | hypothetical protein | - |
| C6P55_RS29780 () | 85496..86023 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| C6P55_RS29785 () | 86079..86312 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| C6P55_RS29790 () | 86371..88328 | + | 1958 | Protein_90 | ParB/RepB/Spo0J family partition protein | - |
| C6P55_RS29795 () | 88383..88817 | + | 435 | WP_000845895.1 | conjugation system SOS inhibitor PsiB | - |
| C6P55_RS29800 () | 88814..89533 | + | 720 | WP_001276228.1 | plasmid SOS inhibition protein A | - |
| C6P55_RS31115 () | 89545..89733 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 89545..89769 | + | 225 | NuclAT_0 | - | - |
| - () | 89545..89769 | + | 225 | NuclAT_0 | - | - |
| - () | 89545..89769 | + | 225 | NuclAT_0 | - | - |
| - () | 89545..89769 | + | 225 | NuclAT_0 | - | - |
| C6P55_RS29805 () | 89813..89971 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C6P55_RS29825 () | 90892..91179 | + | 288 | WP_106912715.1 | hypothetical protein | - |
| C6P55_RS29830 () | 91299..92119 | + | 821 | Protein_96 | DUF932 domain-containing protein | - |
| C6P55_RS29835 () | 92415..93017 | - | 603 | WP_000243709.1 | hypothetical protein | VF |
| C6P55_RS29840 () | 93338..93721 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| C6P55_RS29845 () | 93908..94597 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| C6P55_RS29850 () | 94696..95091 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| C6P55_RS29855 () | 95124..95489 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| C6P55_RS29860 () | 95504..95815 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| C6P55_RS29865 () | 95837..96403 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| C6P55_RS29870 () | 96414..97118 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| C6P55_RS29875 () | 97118..98545 | + | 1428 | WP_000146692.1 | conjugal transfer protein TraB | - |
| C6P55_RS29880 () | 98535..99125 | + | 591 | WP_000002792.1 | conjugal transfer protein TraP | - |
| C6P55_RS29885 () | 99079..99309 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| C6P55_RS29890 () | 99321..99572 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| C6P55_RS29895 () | 99569..100084 | + | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C6P55_RS29900 () | 100219..100440 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| C6P55_RS29905 () | 100600..103227 | + | 2628 | WP_001064247.1 | type IV secretion system protein TraC | - |
| C6P55_RS29910 () | 103224..103610 | + | 387 | WP_000097319.1 | type-F conjugative transfer system protein TrbI | - |
| C6P55_RS29915 () | 103607..104239 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| C6P55_RS29920 () | 104236..105228 | + | 993 | WP_000830187.1 | conjugal transfer pilus assembly protein TraU | - |
| C6P55_RS29925 () | 105237..105875 | + | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C6P55_RS29930 () | 105872..107680 | + | 1809 | WP_000821847.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C6P55_RS29935 () | 107707..107964 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| C6P55_RS29940 () | 107957..108700 | + | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C6P55_RS29945 () | 108716..109063 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| C6P55_RS29950 () | 109065..109379 | - | 315 | WP_000415567.1 | hypothetical protein | - |
| C6P55_RS29955 () | 109460..109744 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C6P55_RS29960 () | 109731..110276 | + | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C6P55_RS29965 () | 110206..110547 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| C6P55_RS29970 () | 110501..110915 | + | 415 | Protein_124 | F-type conjugal transfer protein TrbF | - |
| C6P55_RS29975 () | 110915..112288 | + | 1374 | WP_021553026.1 | conjugal transfer protein TraH | - |
| C6P55_RS29980 () | 112285..115101 | + | 2817 | WP_001007054.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C6P55_RS29985 () | 115134..115655 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| C6P55_RS29990 () | 115680..116411 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| C6P55_RS29995 () | 116664..118430 | + | 1767 | Protein_129 | type IV conjugative transfer system coupling protein TraD | - |
| C6P55_RS30000 () | 118517..118942 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| C6P55_RS30005 () | 118939..119289 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| C6P55_RS30010 () | 119320..120933 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| C6P55_RS30015 () | 120965..121357 | + | 393 | Protein_133 | conjugal transfer protein TraD | - |
| C6P55_RS30020 () | 121366..121764 | - | 399 | WP_000911324.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C6P55_RS30025 () | 121764..121991 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C6P55_RS30030 () | 122073..127342 | + | 5270 | Protein_136 | Multifunctional conjugation protein TraI | Relaxase |
| C6P55_RS30035 () | 127362..128108 | + | 747 | WP_000205777.1 | conjugal transfer pilus acetylase TraX | - |
| C6P55_RS30040 () | 128163..128722 | + | 560 | Protein_138 | fertility inhibition protein FinO | - |
| C6P55_RS30045 () | 128860..129072 | + | 213 | WP_012311405.1 | hypothetical protein | - |
| C6P55_RS30050 () | 129315..129776 | + | 462 | WP_001233871.1 | thermonuclease family protein | - |
| C6P55_RS30055 () | 129822..130031 | + | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| C6P55_RS30060 () | 130069..130642 | + | 574 | Protein_142 | DUF2726 domain-containing protein | - |
| C6P55_RS30065 () | 130881..131141 | + | 261 | WP_000083818.1 | replication regulatory protein RepA | - |
| C6P55_RS30075 () | 131367..131441 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|