MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 149179 bp
Accession: NZ_CP027028 Location: 1..149179 Organism: Shigella dysenteriae strain E670/74 Replicon: plasmid unnamed
Accession: NZ_CP027028 Location: 1..149179 Organism: Shigella dysenteriae strain E670/74 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5S64_RS27250 () | 110..370 | - | 261 | WP_001280546.1 | hypothetical protein | VF |
| C5S64_RS27255 () | 385..1035 | - | 651 | WP_000947538.1 | Surface presentation of antigens protein SpaP | VF |
| C5S64_RS27260 () | 1040..1921 | - | 882 | WP_000944311.1 | Surface presentation of antigens protein SpaO | VF |
| C5S64_RS27265 () | 1915..2793 | - | 879 | WP_001162455.1 | Surface presentation of antigens protein SpaN | VF |
| C5S64_RS27270 () | 2780..3118 | - | 339 | WP_000387670.1 | hypothetical protein | VF |
| C5S64_RS27275 () | 3212..4504 | - | 1293 | WP_000120386.1 | putative ATP synthase SpaL/MxiB | VF |
| C5S64_RS27280 () | 4508..4909 | - | 402 | WP_000065501.1 | Surface presentation of antigens protein SpaK | VF |
| C5S64_RS27285 () | 4922..6982 | - | 2061 | WP_000616105.1 | Protein MxiA | VF |
| C5S64_RS27290 () | 6995..8062 | - | 1068 | WP_000887823.1 | Protein MxiC | VF |
| C5S64_RS27295 () | 8081..9781 | - | 1701 | WP_000714361.1 | Outer membrane protein MxiD | VF |
| C5S64_RS27300 () | 9768..10400 | - | 633 | WP_000398259.1 | Invasion protein InvF | VF |
| C5S64_RS27305 () | 10530..10958 | - | 429 | WP_001346200.1 | Lipoprotein MxiM | VF |
| C5S64_RS27310 () | 10942..11349 | - | 408 | WP_000609861.1 | hypothetical protein | VF |
| C5S64_RS29010 () | 11342..11728 | - | 387 | Protein_14 | hypothetical protein | VF |
| C5S64_RS27320 () | 11750..12781 | - | 1032 | WP_001121440.1 | IS630 family transposase IS630 | Transposase |
| C5S64_RS27325 () | 12884..13192 | - | 309 | Protein_16 | hypothetical protein | VF |
| C5S64_RS27330 () | 13134..13661 | - | 528 | WP_000620627.1 | Oxygen-regulated invasion protein OrgA | VF |
| C5S64_RS27335 () | 13658..14383 | - | 726 | WP_000621941.1 | Lipoprotein PrgK | VF |
| C5S64_RS27340 () | 14389..14682 | - | 294 | WP_001106821.1 | hypothetical protein | VF |
| C5S64_RS27345 () | 14695..14946 | - | 252 | WP_032359554.1 | Protein MxiH | VF |
| C5S64_RS27350 () | 14954..16069 | - | 1116 | WP_105242106.1 | Protein MxiG | VF |
| C5S64_RS27355 () | 16078..16536 | - | 459 | WP_000086110.1 | hypothetical protein | VF |
| C5S64_RS27360 () | 16536..16898 | - | 363 | WP_000389733.1 | Chaperone protein IpgE | VF |
| C5S64_RS27365 () | 16908..18524 | - | 1617 | WP_000548327.1 | Inositol phosphate phosphatase IpgD | VF |
| C5S64_RS27375 () | 18838..20322 | + | 1485 | WP_000601047.1 | hypothetical protein | VF |
| C5S64_RS27380 () | 20335..20724 | + | 390 | WP_010921664.1 | hypothetical protein | VF |
| C5S64_RS27385 () | 20740..21366 | + | 627 | WP_001166528.1 | hypothetical protein | VF |
| C5S64_RS27390 () | 21424..21891 | + | 468 | WP_000055835.1 | Chaperone protein IpgC | VF |
| C5S64_RS27395 () | 21897..23639 | + | 1743 | WP_000552049.1 | Invasin IpaB | VF |
| C5S64_RS27400 () | 23659..24750 | + | 1092 | WP_000405476.1 | Invasin IpaC | VF |
| C5S64_RS27405 () | 24801..25799 | + | 999 | WP_105242107.1 | Invasin IpaD | VF |
| C5S64_RS27410 () | 25808..27708 | + | 1901 | Protein_32 | Invasin IpaA | VF |
| C5S64_RS27415 () | 27712..27948 | + | 237 | WP_000588811.1 | Acyl carrier protein | VF |
| C5S64_RS27420 () | 28165..29094 | + | 930 | WP_000227976.1 | virulence regulon transcriptional activator VirB | - |
| C5S64_RS27425 () | 30040..30819 | - | 780 | WP_005059304.1 | Cysteine protease IpaJ | VF |
| C5S64_RS29015 () | 31419..31556 | - | 138 | WP_001102512.1 | hypothetical protein | - |
| C5S64_RS27440 () | 32172..33176 | + | 1005 | WP_000255972.1 | IS21 family transposase IS100kyp | Transposase |
| C5S64_RS27445 () | 33367..34563 | + | 1197 | WP_005012122.1 | IS110 family transposase ISEc20 | Transposase |
| C5S64_RS27450 () | 34587..34748 | - | 162 | Protein_39 | IS3 family transposase | - |
| C5S64_RS27455 () | 34792..35688 | - | 897 | Protein_40 | IS3 family transposase ISSd1 | Transposase |
| C5S64_RS27460 () | 35750..36901 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5S64_RS27465 () | 36911..37171 | - | 261 | Protein_42 | IS3 family transposase ISSfl11 | Transposase |
| C5S64_RS27475 () | 37509..38963 | - | 1455 | WP_105242108.1 | hypothetical protein | VF |
| C5S64_RS27480 () | 39331..40005 | + | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS27485 () | 40002..40349 | + | 348 | WP_000631725.1 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS27490 () | 40369..41926 | + | 1558 | Protein_46 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS29020 () | 42180..42344 | - | 165 | WP_032336446.1 | hypothetical protein | - |
| C5S64_RS27515 () | 43246..43530 | + | 285 | WP_011114751.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C5S64_RS27520 () | 43518..44003 | + | 486 | WP_000501969.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C5S64_RS27525 () | 44176..44508 | - | 333 | Protein_50 | IS4 family transposase ISSfl1 | Transposase |
| C5S64_RS27530 () | 44572..44832 | + | 261 | Protein_51 | IS3 family transposase ISSfl10 | Transposase |
| C5S64_RS27535 () | 44897..46048 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5S64_RS27540 () | 46055..46480 | + | 426 | Protein_53 | IS3 family transposase ISSfl11 | Transposase |
| C5S64_RS27545 () | 46497..47015 | + | 519 | Protein_54 | IS66 family transposase IS679 | Transposase |
| C5S64_RS28675 () | 47382..48834 | + | 1453 | Protein_55 | hypothetical protein | VF |
| C5S64_RS27560 () | 49187..49927 | - | 741 | WP_000850660.1 | PAP2 family phosphatase PhoN2 | - |
| C5S64_RS27565 () | 50256..51122 | - | 867 | WP_001046939.1 | hypothetical protein | VF |
| C5S64_RS28595 () | 51372..51491 | - | 120 | Protein_58 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
| C5S64_RS27575 () | 51735..52107 | + | 373 | Protein_59 | IS3 family transposase IS2 | Transposase |
| C5S64_RS27585 () | 52669..53616 | - | 948 | WP_005000190.1 | Outer membrane protease IcsP | VF |
| C5S64_RS27595 () | 54997..55149 | - | 153 | Protein_61 | IS3 family transposase | - |
| C5S64_RS27600 () | 55205..55861 | + | 657 | WP_038341698.1 | hypothetical protein | VF |
| C5S64_RS27605 () | 55925..56818 | - | 894 | Protein_63 | IS3 family transposase ISLad1 | Transposase |
| C5S64_RS27610 () | 56821..57207 | - | 387 | Protein_64 | KUP/HAK/KT family potassium transporter | - |
| C5S64_RS27615 () | 57320..57508 | + | 189 | WP_000957853.1 | hypothetical protein | - |
| C5S64_RS27620 () | 57518..58717 | + | 1200 | WP_105242110.1 | IS91 family transposase ISSbo1 | Transposase |
| C5S64_RS27625 () | 58901..59161 | - | 261 | Protein_67 | IS3 family transposase IS911 | Transposase |
| C5S64_RS27630 () | 59235..59573 | + | 339 | Protein_68 | IS3 family transposase IS629 | Transposase |
| C5S64_RS27635 () | 59616..59879 | - | 264 | Protein_69 | IS3 family transposase ISSfl11 | Transposase |
| C5S64_RS27640 () | 59941..61092 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5S64_RS27645 () | 61102..61362 | - | 261 | Protein_71 | IS3 family transposase ISSfl11 | Transposase |
| C5S64_RS27650 () | 61430..61912 | - | 483 | WP_000405248.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C5S64_RS27655 () | 61903..62205 | - | 303 | WP_075330081.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C5S64_RS27665 () | 62477..62749 | + | 273 | WP_000019158.1 | hypothetical protein | - |
| C5S64_RS27670 () | 62730..63853 | + | 1124 | Protein_75 | IS91 family transposase | - |
| C5S64_RS28600 () | 65445..65573 | + | 129 | Protein_77 | IS5 family transposase ISSfl7 | Transposase |
| C5S64_RS27690 () | 65722..67176 | - | 1455 | WP_105242111.1 | hypothetical protein | VF |
| C5S64_RS27695 () | 67648..67998 | + | 351 | Protein_79 | IS91 family transposase ISSbo1 | Transposase |
| C5S64_RS27700 () | 68219..68410 | - | 192 | WP_000829577.1 | hypothetical protein | - |
| C5S64_RS27710 () | 69110..69967 | - | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
| C5S64_RS27715 () | 69960..70034 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C5S64_RS27725 () | 70258..70518 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| C5S64_RS27730 () | 70758..71348 | - | 591 | WP_105242114.1 | DUF2726 domain-containing protein | - |
| C5S64_RS27735 () | 71387..71596 | - | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| C5S64_RS27740 () | 71642..72103 | - | 462 | WP_001233866.1 | thermonuclease family protein | - |
| C5S64_RS27750 () | 72347..72559 | - | 213 | WP_004971339.1 | ANR family transcriptional regulator | - |
| C5S64_RS27755 () | 72690..73250 | - | 561 | WP_000139368.1 | fertility inhibition protein FinO | - |
| C5S64_RS27760 () | 73305..74051 | - | 747 | WP_105242115.1 | conjugal transfer pilus acetylase TraX | - |
| C5S64_RS27765 () | 74071..79341 | - | 5271 | WP_000986949.1 | Multifunctional conjugation protein TraI | Relaxase |
| C5S64_RS27770 () | 79423..79650 | + | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C5S64_RS27775 () | 79650..80048 | + | 399 | WP_000911325.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C5S64_RS27780 () | 80057..82232 | - | 2176 | Protein_93 | type IV conjugative transfer system coupling protein TraD | - |
| C5S64_RS27785 () | 82514..82993 | - | 480 | WP_000282333.1 | hypothetical protein | - |
| C5S64_RS27790 () | 83197..83928 | - | 732 | WP_000850425.1 | complement resistance protein TraT | - |
| C5S64_RS27795 () | 83960..84487 | - | 528 | WP_032336038.1 | entry exclusion protein | - |
| C5S64_RS27800 () | 84533..85564 | + | 1032 | WP_004998488.1 | IS630 family transposase IS630 | Transposase |
| C5S64_RS27805 () | 85717..86660 | - | 944 | Protein_98 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C5S64_RS27810 () | 86725..87675 | - | 951 | WP_004970430.1 | virulence factor VirK | - |
| C5S64_RS27815 () | 87680..88768 | - | 1089 | WP_105242116.1 | putative hexosyltransferase CapU | - |
| C5S64_RS27820 () | 88771..89613 | - | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| C5S64_RS27830 () | 89977..90093 | - | 117 | WP_004996477.1 | hypothetical protein | - |
| C5S64_RS27835 () | 90096..93008 | + | 2913 | WP_165851893.1 | hypothetical protein | - |
| C5S64_RS27840 () | 93038..93362 | - | 325 | Protein_104 | IS3 family transposase | - |
| C5S64_RS29025 () | 93360..93551 | + | 192 | Protein_105 | IS66 family insertion sequence element accessory protein TnpB | - |
| C5S64_RS27850 () | 93565..94911 | - | 1347 | WP_000483769.1 | IS4 family transposase IS4 | Transposase |
| C5S64_RS29030 () | 94974..95258 | - | 285 | Protein_107 | IS66 family insertion sequence element accessory protein TnpB | - |
| C5S64_RS27865 () | 95597..96187 | - | 591 | WP_000705601.1 | Protein kinase OspG | VF |
| C5S64_RS29145 () | 96216..96442 | - | 227 | Protein_109 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C5S64_RS27875 () | 96439..96708 | - | 270 | WP_000079956.1 | hypothetical protein | - |
| C5S64_RS27880 () | 96916..98553 | - | 1638 | WP_105242117.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C5S64_RS28610 () | 98815..98910 | - | 96 | Protein_112 | transposase domain-containing protein | - |
| C5S64_RS27885 () | 99038..100069 | + | 1032 | WP_005011710.1 | IS630 family transposase IS630 | Transposase |
| C5S64_RS27890 () | 100101..100406 | - | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C5S64_RS27895 () | 100408..100626 | - | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C5S64_RS27900 () | 101161..102252 | - | 1092 | Protein_116 | IS66 family transposase ISEc49 | Transposase |
| C5S64_RS27905 () | 102260..102830 | + | 571 | Protein_117 | plasmid segregation protein ParM | - |
| C5S64_RS27910 () | 102833..103184 | + | 352 | Protein_118 | plasmid partitioning/stability family protein | - |
| C5S64_RS29035 () | 103291..103428 | + | 138 | WP_000766699.1 | hypothetical protein | - |
| C5S64_RS27915 () | 103560..103835 | - | 276 | WP_000421262.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C5S64_RS27920 () | 103835..104119 | - | 285 | WP_001178088.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C5S64_RS27930 () | 104643..104822 | + | 180 | Protein_122 | MFS transporter | - |
| C5S64_RS27935 () | 104872..105081 | + | 210 | Protein_123 | peptidoglycan-binding protein | - |
| C5S64_RS27940 () | 105181..105366 | - | 186 | Protein_124 | IS21 family transposase IS100 | Transposase |
| C5S64_RS27945 () | 105570..106244 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS27950 () | 106241..106588 | + | 348 | WP_000631725.1 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS27955 () | 106608..108165 | + | 1558 | Protein_127 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS27960 () | 108210..108608 | + | 399 | Protein_128 | IS1 family transposase | - |
| C5S64_RS29040 () | 108767..109405 | + | 639 | WP_000607008.1 | hypothetical protein | VF |
| C5S64_RS27970 () | 109520..109789 | + | 270 | Protein_130 | IS3 family transposase ISEc48 | Transposase |
| C5S64_RS27975 () | 109877..111105 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C5S64_RS27980 () | 111113..111631 | + | 519 | Protein_132 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS27985 () | 111628..111975 | + | 348 | WP_000631709.1 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS29150 () | 112064..112142 | + | 79 | Protein_134 | aspartate oxidase | - |
| C5S64_RS27990 () | 112111..113007 | - | 897 | Protein_135 | IS3 family transposase ISSd1 | Transposase |
| C5S64_RS27995 () | 113014..114165 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5S64_RS28000 () | 114230..114490 | - | 261 | Protein_137 | IS3 family transposase ISSfl10 | Transposase |
| C5S64_RS28005 () | 114551..116042 | + | 1492 | Protein_138 | IS66 family transposase ISSfl3 | Transposase |
| C5S64_RS28010 () | 116051..116806 | + | 756 | Protein_139 | IS110 family transposase ISSfl8 | Transposase |
| C5S64_RS29155 () | 117109..117381 | - | 273 | Protein_140 | hypothetical protein | - |
| C5S64_RS28020 () | 117379..117972 | - | 594 | Protein_141 | DNA methylase | - |
| C5S64_RS28025 () | 118036..118347 | - | 312 | WP_039071948.1 | hypothetical protein | - |
| C5S64_RS28030 () | 118344..119246 | - | 903 | WP_141095327.1 | DUF1281 domain-containing protein | - |
| C5S64_RS28040 () | 119686..120645 | + | 960 | WP_000921952.1 | plasmid segregation protein ParM | - |
| C5S64_RS28045 () | 120645..121040 | + | 396 | WP_000445931.1 | plasmid partitioning/stability family protein | - |
| C5S64_RS28050 () | 121223..121600 | + | 378 | WP_005014450.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C5S64_RS28055 () | 121646..122490 | + | 845 | WP_094110427.1 | IS5 family transposase ISSfl7 | Transposase |
| C5S64_RS28060 () | 122740..123408 | - | 669 | WP_105242119.1 | phosphatase PAP2 family protein | - |
| C5S64_RS28680 () | 123771..123986 | + | 216 | Protein_149 | IS3 family transposase ISSfl10 | Transposase |
| C5S64_RS28070 () | 124050..125359 | + | 1310 | Protein_150 | group II intron reverse transcriptase/maturase | - |
| C5S64_RS28075 () | 125536..125970 | + | 435 | WP_113774839.1 | reverse transcriptase | - |
| C5S64_RS28080 () | 126044..126163 | + | 120 | Protein_152 | transposase domain-containing protein | - |
| C5S64_RS28085 () | 126296..126466 | + | 171 | Protein_153 | transposase | - |
| C5S64_RS28090 () | 126477..128129 | - | 1653 | WP_039071867.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA | - |
| C5S64_RS28095 () | 128470..129628 | - | 1159 | Protein_155 | IS3 family transposase | - |
| C5S64_RS28100 () | 129704..130127 | - | 424 | Protein_156 | Outer membrane usher protein PapC | VF |
| C5S64_RS28105 () | 130313..133624 | - | 3312 | WP_105242120.1 | Outer membrane protein IcsA autotransporter | VF |
| C5S64_RS28110 () | 134153..135355 | + | 1203 | WP_001195007.1 | Cysteine protease-like VirA | VF |
| C5S64_RS28115 () | 135534..136222 | + | 689 | Protein_159 | IS3 family transposase IS629 | Transposase |
| C5S64_RS28120 () | 136224..136590 | + | 367 | Protein_160 | IS3 family transposase IS629 | Transposase |
| C5S64_RS29045 () | 136518..136991 | + | 474 | Protein_161 | hypothetical protein | - |
| C5S64_RS28140 () | 137744..138109 | + | 366 | WP_000124084.1 | hypothetical protein | - |
| C5S64_RS28145 () | 138157..138586 | + | 430 | Protein_163 | IS91 family transposase IS91 | Transposase |
| C5S64_RS28150 () | 138767..138916 | + | 150 | Protein_164 | transposase | - |
| C5S64_RS28155 () | 138943..140152 | - | 1210 | Protein_165 | IS3 family transposase | - |
| C5S64_RS28160 () | 140205..140666 | + | 462 | Protein_166 | ISL3 family transposase ISKox3 | Transposase |
| C5S64_RS28165 () | 140690..141097 | + | 408 | Protein_167 | IS110 family transposase | - |
| C5S64_RS28175 () | 141682..142398 | + | 717 | WP_005014558.1 | hypothetical protein | - |
| C5S64_RS29050 () | 142950..143353 | + | 404 | Protein_169 | hypothetical protein | - |
| C5S64_RS28190 () | 143416..144050 | + | 635 | Protein_170 | IS3 family transposase IS3H | Transposase |
| C5S64_RS28195 () | 144092..144301 | - | 210 | Protein_171 | IS3 family transposase IS600 | Transposase |
| C5S64_RS28200 () | 144366..144626 | + | 261 | Protein_172 | IS3 family transposase ISSfl11 | Transposase |
| C5S64_RS28205 () | 144691..145842 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| C5S64_RS28210 () | 145849..146622 | + | 774 | Protein_174 | IS3 family transposase ISSfl11 | Transposase |
| C5S64_RS28215 () | 147229..147471 | - | 243 | WP_010921676.1 | hypothetical protein | - |
| C5S64_RS28220 () | 147484..148512 | - | 1029 | WP_001284685.1 | Surface presentation of antigens protein SpaS | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|