MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 150497 bp
Accession: NZ_CP026763 Location: 1..150497 Organism: Shigella boydii strain NCTC 9850 Replicon: plasmid unnamed
Accession: NZ_CP026763 Location: 1..150497 Organism: Shigella boydii strain NCTC 9850 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P50_RS24185 () | 1..676 | + | 676 | Protein_0 | IS1 family transposase IS1R | Transposase |
| C1P50_RS24190 () | 687..893 | - | 207 | WP_012421743.1 | hemolysin expression modulator Hha | - |
| C1P50_RS24195 () | 960..1400 | - | 441 | WP_001233864.1 | thermonuclease family protein | - |
| C1P50_RS24205 () | 1644..1856 | - | 213 | WP_011379083.1 | ANR family transcriptional regulator | - |
| C1P50_RS24210 () | 1987..2547 | - | 561 | WP_005056178.1 | fertility inhibition protein FinO | - |
| C1P50_RS24215 () | 2602..3348 | - | 747 | WP_000205722.1 | conjugal transfer pilus acetylase TraX | - |
| C1P50_RS24220 () | 3368..8239 | - | 4872 | WP_071821517.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1P50_RS24225 () | 8226..8519 | - | 294 | WP_171548087.1 | relaxase domain-containing protein | - |
| C1P50_RS24230 () | 8723..8950 | + | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C1P50_RS24235 () | 8950..9348 | + | 399 | WP_000911319.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C1P50_RS24240 () | 9357..11545 | - | 2189 | Protein_10 | type IV conjugative transfer system coupling protein TraD | - |
| C1P50_RS24245 () | 11793..12490 | + | 698 | Protein_11 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS24250 () | 12506..13177 | + | 672 | Protein_12 | IS630 family transposase IS630 | Transposase |
| C1P50_RS24255 () | 13332..14276 | - | 945 | WP_012421740.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C1P50_RS24260 () | 14341..15291 | - | 951 | WP_012421771.1 | virulence factor VirK | - |
| C1P50_RS24265 () | 15296..16384 | - | 1089 | WP_005027207.1 | putative hexosyltransferase CapU | - |
| C1P50_RS24270 () | 16387..17229 | - | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| C1P50_RS24275 () | 17593..17709 | - | 117 | WP_004996477.1 | hypothetical protein | - |
| C1P50_RS24280 () | 17916..18613 | + | 698 | Protein_18 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS24285 () | 18628..19113 | - | 486 | WP_000705603.1 | Protein kinase OspG | VF |
| C1P50_RS25670 () | 19142..19368 | - | 227 | Protein_20 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P50_RS24295 () | 19365..19634 | - | 270 | WP_000079956.1 | hypothetical protein | - |
| C1P50_RS24300 () | 19842..21479 | - | 1638 | WP_134795474.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C1P50_RS24305 () | 21722..21817 | - | 96 | Protein_23 | transposase domain-containing protein | - |
| C1P50_RS24310 () | 21853..22158 | - | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C1P50_RS24315 () | 22160..22378 | - | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C1P50_RS24325 () | 22971..23243 | + | 273 | WP_012421738.1 | hypothetical protein | - |
| C1P50_RS25675 () | 24584..25027 | - | 444 | WP_201797260.1 | hypothetical protein | - |
| C1P50_RS24340 () | 25310..25525 | - | 216 | Protein_29 | IS3 family transposase IS600 | Transposase |
| C1P50_RS24350 () | 25888..26637 | + | 750 | WP_000828661.1 | phosphatase PAP2 family protein | - |
| C1P50_RS24355 () | 26809..27653 | - | 845 | Protein_31 | IS5 family transposase ISSfl7 | Transposase |
| C1P50_RS24360 () | 27699..28064 | - | 366 | WP_073691780.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C1P50_RS24365 () | 28157..29385 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P50_RS24370 () | 29504..29899 | - | 396 | WP_000445931.1 | plasmid partitioning/stability family protein | - |
| C1P50_RS24375 () | 29899..30858 | - | 960 | WP_000921951.1 | plasmid segregation protein ParM | - |
| C1P50_RS24395 () | 31877..32916 | - | 1040 | Protein_36 | IS3 family transposase | - |
| C1P50_RS24400 () | 32970..34183 | + | 1214 | Protein_37 | IS3 family transposase IS629 | Transposase |
| C1P50_RS24405 () | 34227..34358 | - | 132 | Protein_38 | IS3 family transposase IS911 | Transposase |
| C1P50_RS24410 () | 34430..34720 | + | 291 | Protein_39 | reverse transcriptase | - |
| C1P50_RS24415 () | 34794..34913 | + | 120 | Protein_40 | transposase domain-containing protein | - |
| C1P50_RS24420 () | 34953..35261 | - | 309 | Protein_41 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS24425 () | 35298..36836 | - | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| C1P50_RS24430 () | 36885..37232 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C1P50_RS24435 () | 37229..37609 | - | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C1P50_RS24440 () | 37703..38143 | + | 441 | Protein_45 | IS21 family transposase IS100kyp | Transposase |
| C1P50_RS24445 () | 38335..39531 | + | 1197 | WP_134795475.1 | IS110 family transposase ISEc20 | Transposase |
| C1P50_RS24450 () | 39581..40418 | - | 838 | Protein_47 | IS4 family transposase ISEc13 | Transposase |
| C1P50_RS25680 () | 40401..40742 | - | 342 | Protein_48 | IS4 family transposase ISEc13 | Transposase |
| C1P50_RS24455 () | 40857..41657 | - | 801 | Protein_49 | IS3 family transposase ISKpn38 | Transposase |
| C1P50_RS24470 () | 43195..44649 | - | 1455 | WP_000701115.1 | hypothetical protein | VF |
| C1P50_RS24480 () | 45018..46227 | - | 1210 | Protein_52 | IS3 family transposase IS629 | Transposase |
| C1P50_RS24485 () | 46279..48003 | - | 1725 | WP_012421703.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| C1P50_RS24490 () | 48431..50128 | - | 1698 | WP_012421752.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P50_RS24495 () | 50457..50636 | + | 180 | Protein_55 | transposase | - |
| C1P50_RS24500 () | 50653..51343 | - | 691 | Protein_56 | IS1 family transposase | - |
| C1P50_RS24505 () | 51537..52568 | - | 1032 | WP_004998488.1 | IS630 family transposase IS630 | Transposase |
| C1P50_RS24510 () | 52683..53527 | - | 845 | Protein_58 | IS5 family transposase ISSfl7 | Transposase |
| C1P50_RS24520 () | 53704..53994 | - | 291 | Protein_59 | IS91 family transposase ISSbo1 | Transposase |
| C1P50_RS24525 () | 54008..55354 | - | 1347 | WP_000483764.1 | IS4 family transposase IS4 | Transposase |
| C1P50_RS24530 () | 55421..55636 | - | 216 | Protein_61 | transposase | - |
| C1P50_RS24535 () | 55913..56788 | + | 876 | WP_001224621.1 | ChaN family lipoprotein | - |
| C1P50_RS24540 () | 56796..57572 | + | 777 | WP_000981089.1 | energy transducer TonB | - |
| C1P50_RS24545 () | 57741..60002 | + | 2262 | WP_001100761.1 | TonB-dependent receptor | - |
| C1P50_RS24555 () | 60071..61246 | + | 1176 | WP_001020414.1 | putative protein YncE | VF |
| C1P50_RS24565 () | 61705..62055 | + | 351 | WP_171525606.1 | HNH endonuclease | - |
| C1P50_RS24570 () | 62198..62419 | + | 222 | Protein_67 | IS66 family transposase ISCro1 | Transposase |
| C1P50_RS24575 () | 62440..62502 | - | 63 | Protein_68 | IS66 family transposase ISCro1 | Transposase |
| C1P50_RS24580 () | 62953..64365 | + | 1413 | WP_001026856.1 | hypothetical protein | VF |
| C1P50_RS24585 () | 64469..64617 | - | 149 | Protein_70 | IS1 family transposase | - |
| C1P50_RS24590 () | 64693..66390 | + | 1698 | WP_011310400.1 | hypothetical protein | VF |
| C1P50_RS24600 () | 66507..66626 | + | 120 | Protein_72 | IS66 family insertion sequence hypothetical protein | - |
| C1P50_RS24610 () | 66793..67065 | + | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P50_RS24615 () | 67046..68254 | + | 1209 | WP_134795476.1 | IS91 family transposase ISSbo1 | Transposase |
| C1P50_RS24620 () | 68427..68522 | - | 96 | Protein_75 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P50_RS24625 () | 68522..68605 | - | 84 | Protein_76 | CopG family transcriptional regulator | - |
| C1P50_RS24630 () | 68635..68964 | - | 330 | Protein_77 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| C1P50_RS24635 () | 69049..69414 | + | 366 | WP_000124079.1 | hypothetical protein | - |
| C1P50_RS24640 () | 69414..70601 | + | 1188 | WP_024258531.1 | IS91 family transposase ISEc37 | Transposase |
| C1P50_RS24660 () | 71138..71425 | - | 288 | WP_000865087.1 | helix-turn-helix transcriptional regulator | - |
| C1P50_RS24665 () | 71425..71736 | - | 312 | WP_000483533.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P50_RS24670 () | 72201..73397 | + | 1197 | WP_012421555.1 | IS110 family transposase ISEc20 | Transposase |
| C1P50_RS24675 () | 73768..74034 | - | 267 | WP_000957717.1 | hypothetical protein | VF |
| C1P50_RS24680 () | 74216..74314 | - | 99 | Protein_84 | transposase | - |
| C1P50_RS24685 () | 74374..75071 | + | 698 | Protein_85 | IS1 family transposase IS1R | Transposase |
| C1P50_RS24690 () | 75403..76191 | + | 789 | WP_005116773.1 | AraC family invasion system transcriptional regulator VirF | - |
| C1P50_RS24695 () | 76184..76555 | - | 372 | Protein_87 | IS21 family transposase IS100 | Transposase |
| C1P50_RS24700 () | 76554..76972 | + | 419 | Protein_88 | transposase | - |
| C1P50_RS24705 () | 77046..78214 | + | 1169 | WP_094096743.1 | IS3 family transposase | - |
| C1P50_RS24715 () | 78419..79546 | + | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| C1P50_RS24720 () | 79894..80328 | + | 435 | WP_001403014.1 | IS66 family transposase ISEc43 | Transposase |
| C1P50_RS24725 () | 80325..80675 | + | 351 | WP_000624688.1 | IS66 family transposase ISEc47 | Transposase |
| C1P50_RS24730 () | 80706..82298 | + | 1593 | WP_134795355.1 | IS66 family transposase ISEc47 | Transposase |
| C1P50_RS24735 () | 82458..82613 | + | 156 | Protein_94 | IS256 family transposase ISEc39 | Transposase |
| C1P50_RS24740 () | 82643..84370 | - | 1728 | WP_012421744.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P50_RS24745 () | 84760..85028 | - | 269 | Protein_96 | hypothetical protein | VF |
| C1P50_RS25685 () | 85175..85318 | - | 144 | Protein_97 | IS1 family transposase | - |
| C1P50_RS25605 () | 85676..85828 | - | 153 | WP_011114782.1 | hypothetical protein | - |
| C1P50_RS24755 () | 85867..86390 | + | 524 | Protein_99 | IS3 family transposase ISSfl11 | Transposase |
| C1P50_RS24770 () | 87949..88131 | + | 183 | WP_089519923.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P50_RS24775 () | 88151..89752 | + | 1602 | WP_004967149.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P50_RS24780 () | 89752..90249 | + | 498 | Protein_103 | IS1 family transposase | - |
| C1P50_RS25610 () | 90408..91046 | + | 639 | WP_000607008.1 | hypothetical protein | VF |
| C1P50_RS24790 () | 91161..91430 | + | 270 | Protein_105 | IS3 family transposase ISEc48 | Transposase |
| C1P50_RS24795 () | 91518..92746 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P50_RS24805 () | 92994..93120 | + | 127 | Protein_107 | IS110 family transposase | - |
| C1P50_RS24810 () | 93130..93729 | - | 600 | Protein_108 | IS3 family transposase | - |
| C1P50_RS24815 () | 93786..94999 | + | 1214 | WP_164997312.1 | IS3 family transposase IS629 | Transposase |
| C1P50_RS24825 () | 95043..95611 | - | 569 | Protein_110 | IS3 family transposase IS911 | Transposase |
| C1P50_RS24840 () | 96284..96568 | + | 285 | WP_011114751.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P50_RS24845 () | 96556..97041 | + | 486 | WP_000501969.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P50_RS24850 () | 97082..97870 | - | 789 | Protein_113 | IS66 family transposase ISEc43 | Transposase |
| C1P50_RS24860 () | 99161..99340 | + | 180 | Protein_115 | transposase | - |
| C1P50_RS24870 () | 99866..101044 | + | 1179 | WP_073714961.1 | group II intron reverse transcriptase/maturase | - |
| C1P50_RS24875 () | 101127..101306 | + | 180 | Protein_117 | transposase domain-containing protein | - |
| C1P50_RS24880 () | 101336..101818 | - | 483 | Protein_118 | IS110 family transposase ISSde4 | Transposase |
| C1P50_RS24885 () | 102074..103054 | - | 981 | WP_000431558.1 | ParB/RepB/Spo0J family partition protein | - |
| C1P50_RS24890 () | 103054..104253 | - | 1200 | WP_000200287.1 | AAA family ATPase | - |
| C1P50_RS24895 () | 104391..104552 | - | 162 | WP_004979576.1 | hypothetical protein | - |
| C1P50_RS24900 () | 104575..104912 | - | 338 | Protein_122 | IS1 family transposase | - |
| C1P50_RS24905 () | 104979..105761 | - | 783 | WP_012421731.1 | IS21 family transposase IS100kyp | Transposase |
| C1P50_RS24910 () | 105758..106780 | - | 1023 | WP_005031026.1 | IS21 family transposase IS100kyp | Transposase |
| C1P50_RS24920 () | 106867..107013 | - | 147 | Protein_125 | IS1 family transposase | - |
| C1P50_RS24925 () | 107054..107751 | + | 698 | Protein_126 | IS1 family transposase IS1R | Transposase |
| C1P50_RS24930 () | 107765..108003 | - | 239 | Protein_127 | IS1 family transposase | - |
| C1P50_RS24935 () | 108343..108897 | - | 555 | Protein_128 | IS3 family transposase IS3H | Transposase |
| C1P50_RS24940 () | 109040..109162 | + | 123 | Protein_129 | transposase domain-containing protein | - |
| C1P50_RS24945 () | 109424..109990 | - | 567 | WP_005057975.1 | hypothetical protein | VF |
| C1P50_RS25615 () | 110272..110586 | - | 315 | WP_011114726.1 | hypothetical protein | - |
| C1P50_RS25310 () | 110664..110774 | - | 111 | Protein_132 | IS3 family transposase | - |
| C1P50_RS24965 () | 111098..111775 | - | 678 | WP_000026472.1 | hypothetical protein | VF |
| C1P50_RS24970 () | 112146..112283 | - | 138 | Protein_134 | IS630 family transposase | - |
| C1P50_RS24975 () | 112365..112663 | - | 299 | Protein_135 | IS256 family transposase IS1414 | Transposase |
| C1P50_RS24980 () | 113252..113411 | - | 160 | Protein_136 | IS3 family transposase | - |
| C1P50_RS24985 () | 113415..114569 | - | 1155 | Protein_137 | IS66 family transposase ISCro1 | Transposase |
| C1P50_RS24990 () | 114589..114936 | - | 348 | WP_134795480.1 | IS66 family transposase ISCro1 | Transposase |
| C1P50_RS24995 () | 114936..115313 | - | 378 | Protein_139 | IS66 family transposase ISCro1 | Transposase |
| C1P50_RS25000 () | 115380..116726 | + | 1347 | WP_000483764.1 | IS4 family transposase IS4 | Transposase |
| C1P50_RS25620 () | 116740..117021 | - | 282 | Protein_141 | IS66 family transposase ISCro1 | Transposase |
| C1P50_RS25010 () | 117184..117369 | + | 186 | WP_005008511.1 | hypothetical protein | - |
| C1P50_RS25015 () | 117417..117846 | + | 430 | Protein_143 | IS91 family transposase ISEc37 | Transposase |
| C1P50_RS25020 () | 118033..118270 | + | 238 | Protein_144 | IS21 family transposase IS21 | Transposase |
| C1P50_RS25025 () | 118691..119269 | + | 579 | WP_000868561.1 | hypothetical protein | - |
| C1P50_RS25030 () | 119378..119636 | - | 259 | Protein_146 | IS1 family transposase | - |
| C1P50_RS25035 () | 119620..120183 | + | 564 | Protein_147 | ISL3 family transposase ISKox3 | Transposase |
| C1P50_RS25040 () | 120308..121027 | + | 720 | WP_001121865.1 | Phosphothreonine lyase OspF | VF |
| C1P50_RS25045 () | 121473..123182 | + | 1710 | WP_012421777.1 | hypothetical protein | VF |
| C1P50_RS25050 () | 123264..123461 | - | 198 | WP_005008498.1 | hypothetical protein | - |
| C1P50_RS25055 () | 123872..124557 | + | 686 | Protein_151 | IS3 family transposase ISSfl11 | Transposase |
| C1P50_RS25060 () | 124574..125092 | + | 519 | Protein_152 | IS66 family transposase IS679 | Transposase |
| C1P50_RS25065 () | 125215..125912 | - | 698 | Protein_153 | IS1 family transposase IS1R | Transposase |
| C1P50_RS25070 () | 126111..127339 | + | 1229 | WP_167549346.1 | IS3 family transposase IS2 | Transposase |
| C1P50_RS25075 () | 127431..128128 | + | 698 | Protein_155 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS25080 () | 128134..128314 | + | 181 | Protein_156 | hypothetical protein | VF |
| C1P50_RS25090 () | 128667..129407 | - | 741 | WP_000850663.1 | PAP2 family phosphatase PhoN2 | - |
| C1P50_RS25095 () | 129736..130602 | - | 867 | WP_001046939.1 | hypothetical protein | VF |
| C1P50_RS25100 () | 130852..130971 | - | 120 | Protein_159 | DUF3440 domain-containing protein | - |
| C1P50_RS25105 () | 131081..132309 | + | 1229 | Protein_160 | IS3 family transposase IS2 | Transposase |
| C1P50_RS25120 () | 134138..135085 | - | 948 | WP_005005342.1 | Outer membrane protease IcsP | VF |
| C1P50_RS25395 () | 136047..136184 | + | 138 | WP_012421760.1 | hypothetical protein | - |
| C1P50_RS25130 () | 136466..136618 | - | 153 | Protein_164 | IS3 family transposase | - |
| C1P50_RS25135 () | 136674..137366 | + | 693 | WP_000625263.1 | hypothetical protein | VF |
| C1P50_RS25140 () | 137390..138466 | - | 1077 | Protein_166 | IS3 family transposase | - |
| C1P50_RS25150 () | 138635..139117 | - | 483 | WP_000405248.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P50_RS25155 () | 139108..139410 | - | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P50_RS25165 () | 139675..139947 | + | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P50_RS25170 () | 139928..141136 | + | 1209 | WP_134795483.1 | IS91 family transposase ISSbo1 | Transposase |
| C1P50_RS25320 () | 141308..141436 | + | 129 | Protein_171 | IS5 family transposase ISSfl7 | Transposase |
| C1P50_RS25185 () | 141585..143039 | - | 1455 | WP_000701110.1 | hypothetical protein | VF |
| C1P50_RS25190 () | 143464..144308 | + | 845 | WP_094096542.1 | IS5 family transposase ISSfl7 | Transposase |
| C1P50_RS25195 () | 144553..144834 | - | 282 | Protein_174 | transposase domain-containing protein | - |
| C1P50_RS25200 () | 144889..145143 | + | 255 | Protein_175 | IS3 family transposase IS1203 | Transposase |
| C1P50_RS25625 () | 145251..145439 | + | 189 | WP_000957863.1 | hypothetical protein | - |
| C1P50_RS25210 () | 145449..146648 | + | 1200 | WP_134795484.1 | IS91 family transposase ISSbo1 | Transposase |
| C1P50_RS25215 () | 146820..147143 | + | 324 | Protein_178 | IS110 family transposase IS1663 | Transposase |
| C1P50_RS25230 () | 148127..148984 | - | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
| C1P50_RS25235 () | 148977..149051 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C1P50_RS25245 () | 149275..149535 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| C1P50_RS25250 () | 149775..150365 | - | 591 | WP_000766818.1 | DUF2726 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|