MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 159592 bp
Accession: NZ_CP026558 Location: 113913..273504 Organism: Pseudomonas amygdali pv. morsprunorum strain R15244 Replicon: chromosome
Accession: NZ_CP026558 Location: 113913..273504 Organism: Pseudomonas amygdali pv. morsprunorum strain R15244 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKM19_RS31420 () | 108917..109234 | + | 318 | WP_103408422.1 | hypothetical protein | - |
| BKM19_RS01080 () | 109255..109876 | + | 622 | Protein_98 | nucleoside 2-deoxyribosyltransferase | - |
| BKM19_RS01085 () | 109967..110770 | - | 804 | WP_003417182.1 | IS21-like element ISPsy20 family helper ATPase IstB | - |
| BKM19_RS01090 () | 110763..112262 | - | 1500 | WP_103356851.1 | IS21 family transposase | - |
| BKM19_RS01095 () | 112489..113952 | + | 1464 | WP_103356850.1 | ATP-binding protein | - |
| BKM19_RS01100 () | 114349..114702 | + | 354 | WP_060403126.1 | hypothetical protein | - |
| BKM19_RS01105 () | 115177..116083 | - | 907 | Protein_103 | tyrosine protein phosphatase | - |
| BKM19_RS01110 () | 116510..117190 | - | 681 | WP_081080321.1 | Abi family protein | - |
| BKM19_RS01115 () | 117378..117596 | - | 219 | Protein_105 | arylsulfatase regulator | - |
| BKM19_RS01120 () | 117784..118941 | - | 1158 | WP_146047469.1 | IS91 family transposase | - |
| BKM19_RS01125 () | 119120..119305 | + | 186 | Protein_107 | ATP-binding protein | - |
| BKM19_RS01130 () | 119393..121180 | - | 1788 | WP_060403784.1 | EAL domain-containing protein | - |
| BKM19_RS01135 () | 121428..123347 | + | 1920 | WP_060403782.1 | response regulator | - |
| BKM19_RS01140 () | 123761..124093 | + | 333 | WP_060403781.1 | hypothetical protein | - |
| BKM19_RS01145 () | 124278..125240 | - | 963 | WP_060403780.1 | tyrosine-type recombinase/integrase | - |
| BKM19_RS01150 () | 125458..125958 | + | 501 | WP_007247495.1 | type VI secretion system tube protein Hcp | - |
| BKM19_RS01155 () | 125983..126510 | + | 528 | WP_010204128.1 | DUF2778 domain-containing protein | - |
| BKM19_RS01165 () | 127017..127898 | - | 882 | WP_010204121.1 | LysR family transcriptional regulator | - |
| BKM19_RS01170 () | 128189..129520 | + | 1332 | WP_031598409.1 | MFS transporter | - |
| BKM19_RS32045 () | 129731..129907 | + | 177 | WP_010209149.1 | hypothetical protein | - |
| BKM19_RS01175 () | 129926..130282 | - | 357 | WP_007247489.1 | helix-turn-helix domain-containing protein | - |
| BKM19_RS01180 () | 130526..131059 | + | 534 | WP_005769797.1 | transcriptional regulator | - |
| BKM19_RS01185 () | 131148..131357 | + | 210 | WP_003344343.1 | hypothetical protein | - |
| BKM19_RS01195 () | 131650..132141 | + | 492 | WP_010209157.1 | lytic transglycosylase domain-containing protein | - |
| BKM19_RS01200 () | 132178..132651 | + | 474 | WP_005759124.1 | DotD/TraH family lipoprotein | - |
| BKM19_RS01205 () | 132648..133448 | + | 801 | WP_007247253.1 | type IV secretion system DotC family protein | - |
| BKM19_RS01210 () | 133445..134626 | + | 1182 | WP_060404092.1 | plasmid transfer ATPase TraJ | - |
| BKM19_RS01215 () | 134758..134991 | + | 234 | WP_010209171.1 | hypothetical protein | - |
| BKM19_RS01220 () | 135029..135277 | + | 249 | WP_053486299.1 | hypothetical protein | - |
| BKM19_RS01225 () | 135357..135854 | + | 498 | WP_010208377.1 | phospholipase D family protein | - |
| BKM19_RS01230 () | 135891..136136 | + | 246 | WP_010208376.1 | hypothetical protein | - |
| BKM19_RS01235 () | 136165..136446 | + | 282 | WP_010208375.1 | IcmT/TraK family protein | - |
| BKM19_RS01240 () | 136951..141240 | + | 4290 | WP_168199516.1 | DNA primase | - |
| BKM19_RS01245 () | 141266..141619 | + | 354 | WP_010214729.1 | hypothetical protein | - |
| BKM19_RS01250 () | 141616..142320 | + | 705 | WP_010214730.1 | DotI/IcmL/TraM family protein | - |
| BKM19_RS01255 () | 142377..143435 | + | 1059 | WP_081083442.1 | conjugal transfer protein TraN | - |
| BKM19_RS01260 () | 143441..144799 | + | 1359 | WP_060404094.1 | conjugal transfer protein TraO | - |
| BKM19_RS01265 () | 144796..145506 | + | 711 | WP_010209696.1 | conjugal transfer protein TraP | - |
| BKM19_RS01270 () | 145515..146057 | + | 543 | WP_103356826.1 | conjugal transfer protein TraQ | - |
| BKM19_RS01275 () | 146133..146528 | + | 396 | WP_005740383.1 | hypothetical protein | - |
| BKM19_RS01280 () | 146609..147220 | + | 612 | WP_010209692.1 | hypothetical protein | - |
| BKM19_RS01285 () | 147195..150251 | + | 3057 | WP_099456609.1 | conjugal transfer protein | - |
| BKM19_RS01290 () | 150275..150511 | + | 237 | WP_060404097.1 | hypothetical protein | - |
| BKM19_RS01295 () | 150554..151768 | + | 1215 | WP_060404098.1 | conjugal transfer protein TraW | - |
| BKM19_RS01300 () | 151758..152336 | + | 579 | WP_004642775.1 | conjugal transfer protein TraX | - |
| BKM19_RS01305 () | 152467..154611 | + | 2145 | WP_060404099.1 | DotA/TraY family protein | - |
| BKM19_RS01310 () | 154598..155257 | + | 660 | WP_044424882.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| BKM19_RS01315 () | 155350..156552 | + | 1203 | WP_044424879.1 | hypothetical protein | - |
| BKM19_RS01320 () | 156542..156919 | - | 378 | WP_003344395.1 | PIN domain-containing protein | Toxin Detail |
| BKM19_RS01325 () | 156916..157116 | - | 201 | WP_004644067.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| BKM19_RS01330 () | 157209..157382 | + | 174 | Protein_147 | conjugal transfer protein TrbB | - |
| BKM19_RS01340 () | 157565..158794 | - | 1230 | WP_104808010.1 | IS91 family transposase | - |
| BKM19_RS01345 () | 158775..159056 | - | 282 | WP_060402791.1 | hypothetical protein | - |
| BKM19_RS01350 () | 159098..159493 | + | 396 | WP_060403043.1 | hypothetical protein | - |
| BKM19_RS01355 () | 159478..160446 | + | 969 | WP_044422905.1 | AAA family ATPase | - |
| BKM19_RS01360 () | 160586..161878 | - | 1293 | WP_060403044.1 | MFS transporter | - |
| BKM19_RS01365 () | 161891..162868 | - | 978 | WP_060403045.1 | hypothetical protein | - |
| BKM19_RS01370 () | 162892..163587 | - | 696 | WP_044422903.1 | hypothetical protein | - |
| BKM19_RS01375 () | 163587..164579 | - | 993 | WP_060403046.1 | SagB/ThcOx family dehydrogenase | - |
| BKM19_RS01380 () | 165282..165662 | + | 381 | WP_081080453.1 | recombinase family protein | - |
| BKM19_RS01385 () | 166048..166443 | + | 396 | WP_058886841.1 | CesT family type III secretion system chaperone | - |
| BKM19_RS01390 () | 166454..167041 | + | 588 | WP_081080359.1 | hypothetical protein | - |
| BKM19_RS01395 () | 167155..167956 | - | 802 | Protein_159 | IS3 family transposase | - |
| BKM19_RS01405 () | 168193..169020 | - | 828 | Protein_160 | IS5-like element ISPsy19 family transposase | - |
| BKM19_RS31425 () | 169002..169589 | - | 588 | WP_158664280.1 | hypothetical protein | - |
| BKM19_RS01410 () | 169931..170437 | - | 507 | Protein_162 | DNA polymerase V subunit UmuC | - |
| BKM19_RS01415 () | 170481..171929 | - | 1449 | WP_005622074.1 | FAD-binding oxidoreductase | - |
| BKM19_RS01420 () | 171968..172933 | - | 966 | WP_024420007.1 | isopenicillin N synthase family oxygenase | - |
| BKM19_RS01425 () | 173145..173418 | - | 274 | Protein_165 | IS21 family transposase | - |
| BKM19_RS01430 () | 173562..174071 | - | 510 | WP_005735414.1 | peptide deformylase | - |
| BKM19_RS01440 () | 174359..175588 | - | 1230 | WP_015062536.1 | IS91 family transposase | - |
| BKM19_RS01445 () | 175569..175850 | - | 282 | WP_015062535.1 | hypothetical protein | - |
| BKM19_RS31430 () | 175932..176075 | + | 144 | Protein_169 | transposase | - |
| BKM19_RS01450 () | 176078..176305 | + | 228 | WP_004642455.1 | hypothetical protein | - |
| BKM19_RS01455 () | 176381..176956 | - | 576 | WP_060402810.1 | recombinase family protein | - |
| BKM19_RS01460 () | 177501..178322 | + | 822 | WP_005735297.1 | C58 family peptidase | - |
| BKM19_RS01465 () | 178361..178549 | + | 189 | Protein_173 | helix-turn-helix domain-containing protein | - |
| BKM19_RS32050 () | 178553..178765 | + | 213 | Protein_174 | DUF4158 domain-containing protein | - |
| BKM19_RS01475 () | 178763..179094 | + | 332 | Protein_175 | Tn3 family transposase | - |
| BKM19_RS01480 () | 179199..179912 | - | 714 | WP_053479514.1 | UPF0149 family protein | - |
| BKM19_RS01485 () | 180123..180395 | - | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BKM19_RS01490 () | 180385..180570 | - | 186 | WP_005730485.1 | hypothetical protein | Antitoxin Detail |
| BKM19_RS01495 () | 180621..180899 | - | 279 | WP_053479513.1 | hypothetical protein | - |
| BKM19_RS01500 () | 180992..181627 | - | 636 | WP_054068142.1 | recombinase family protein | - |
| BKM19_RS01505 () | 181972..182670 | + | 699 | WP_005734862.1 | ParA family protein | - |
| BKM19_RS01510 () | 182663..182986 | + | 324 | WP_007253135.1 | hypothetical protein | - |
| BKM19_RS01525 () | 183316..184815 | + | 1500 | WP_103356851.1 | IS21 family transposase | - |
| BKM19_RS01530 () | 184808..185611 | + | 804 | WP_003417182.1 | IS21-like element ISPsy20 family helper ATPase IstB | - |
| BKM19_RS01540 () | 186232..186609 | + | 378 | WP_007247501.1 | hypothetical protein | - |
| BKM19_RS01545 () | 186656..187492 | + | 837 | WP_060407272.1 | DUF945 domain-containing protein | - |
| BKM19_RS01550 () | 187552..187752 | + | 201 | WP_055001606.1 | hypothetical protein | - |
| BKM19_RS01555 () | 187819..188097 | - | 279 | WP_004661031.1 | mobilization protein | - |
| BKM19_RS01565 () | 188395..188745 | - | 351 | WP_060407318.1 | hypothetical protein | - |
| BKM19_RS01570 () | 189005..189334 | + | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| BKM19_RS01575 () | 189345..191300 | + | 1956 | WP_007247497.1 | relaxase/mobilization nuclease domain-containing protein | - |
| BKM19_RS01580 () | 191325..192008 | - | 684 | WP_032640233.1 | hypothetical protein | - |
| BKM19_RS01585 () | 192263..192511 | + | 249 | WP_057432311.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| BKM19_RS01590 () | 192524..192874 | + | 351 | WP_057456423.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BKM19_RS01595 () | 192981..193385 | - | 405 | WP_057456424.1 | hypothetical protein | - |
| BKM19_RS01600 () | 193375..196197 | - | 2823 | WP_060403779.1 | RHS repeat protein | - |
| BKM19_RS01605 () | 196194..196985 | - | 792 | WP_057431753.1 | RHS repeat protein | - |
| BKM19_RS01610 () | 197711..198934 | - | 1224 | WP_081083437.1 | RHS repeat protein | - |
| BKM19_RS01620 () | 200152..200457 | + | 306 | WP_054071526.1 | type III chaperone protein ShcF | - |
| BKM19_RS01625 () | 201099..201761 | + | 663 | WP_060403777.1 | hypothetical protein | - |
| BKM19_RS32055 () | 201828..201919 | + | 92 | Protein_201 | transposase | - |
| BKM19_RS01630 () | 202030..202635 | - | 606 | WP_044295311.1 | recombinase family protein | - |
| BKM19_RS01635 () | 202729..205617 | + | 2889 | WP_060403776.1 | Tn3 family transposase | - |
| BKM19_RS01640 () | 205659..206564 | - | 906 | WP_057425411.1 | serine hydrolase | - |
| BKM19_RS01645 () | 207157..208242 | - | 1086 | WP_002556026.1 | DUF3616 domain-containing protein | - |
| BKM19_RS01650 () | 208393..208614 | + | 222 | WP_004666801.1 | hypothetical protein | - |
| BKM19_RS01655 () | 209178..210196 | - | 1019 | Protein_207 | tyrosine protein phosphatase | - |
| BKM19_RS01660 () | 210569..210877 | + | 309 | WP_180275929.1 | DUF4113 domain-containing protein | - |
| BKM19_RS01665 () | 210952..211236 | - | 285 | WP_003407168.1 | putative addiction module antidote protein | Antitoxin Detail |
| BKM19_RS01670 () | 211233..211532 | - | 300 | WP_044322659.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BKM19_RS01680 () | 212085..212501 | + | 417 | WP_060403106.1 | hypothetical protein | - |
| BKM19_RS01690 () | 212897..213550 | + | 654 | WP_060403115.1 | AAA family ATPase | - |
| BKM19_RS01695 () | 213639..213890 | + | 252 | WP_003348789.1 | ribbon-helix-helix protein, CopG family | - |
| BKM19_RS01700 () | 214155..214796 | + | 642 | WP_060403107.1 | SOS response-associated peptidase | - |
| BKM19_RS01710 () | 215180..217795 | + | 2616 | WP_060403108.1 | AAA family ATPase | - |
| BKM19_RS01720 () | 218259..220289 | - | 2031 | WP_060403116.1 | hypothetical protein | - |
| BKM19_RS01735 () | 220834..221130 | + | 297 | WP_025992726.1 | hypothetical protein | - |
| BKM19_RS01740 () | 221149..221769 | - | 621 | WP_005769724.1 | recombinase family protein | - |
| BKM19_RS01745 () | 222360..224390 | - | 2031 | WP_060403109.1 | methyl-accepting chemotaxis protein | - |
| BKM19_RS01755 () | 225369..225779 | + | 411 | WP_060403110.1 | hypothetical protein | - |
| BKM19_RS01760 () | 226118..228154 | - | 2037 | WP_060403111.1 | methyl-accepting chemotaxis protein | - |
| BKM19_RS01765 () | 228441..229967 | - | 1527 | WP_060403112.1 | IS66-like element ISPsy43 family transposase | - |
| BKM19_RS32060 () | 230243..230386 | - | 144 | Protein_223 | IS66 family insertion sequence element accessory protein TnpB | - |
| BKM19_RS31440 () | 230383..230751 | - | 369 | WP_080103374.1 | IS66 family insertion sequence hypothetical protein | - |
| BKM19_RS01790 () | 231156..231587 | - | 432 | WP_010431494.1 | hypothetical protein | - |
| BKM19_RS01795 () | 231587..232413 | - | 827 | Protein_226 | GAF domain-containing protein | - |
| BKM19_RS01800 () | 232786..233211 | - | 426 | WP_060403113.1 | DUF1493 family protein | - |
| BKM19_RS01805 () | 233212..233643 | - | 432 | WP_060403114.1 | hypothetical protein | - |
| BKM19_RS01810 () | 233654..234157 | - | 504 | WP_003318711.1 | type VI secretion system tube protein Hcp | - |
| BKM19_RS01815 () | 235219..236028 | - | 810 | WP_005741073.1 | IS21-like element ISPsy4 family helper ATPase IstB | - |
| BKM19_RS01820 () | 236025..237047 | - | 1023 | WP_002551322.1 | IS21-like element ISPsy4 family transposase | - |
| BKM19_RS01830 () | 237784..238287 | - | 504 | WP_060404375.1 | hypothetical protein | - |
| BKM19_RS01835 () | 238324..240495 | - | 2172 | WP_060404374.1 | DotA/TraY family protein | - |
| BKM19_RS01840 () | 240492..240818 | - | 327 | WP_060404373.1 | hypothetical protein | - |
| BKM19_RS01845 () | 241412..242074 | + | 663 | WP_060404372.1 | hypothetical protein | - |
| BKM19_RS01850 () | 242071..242988 | + | 918 | WP_197714320.1 | SIR2 family protein | - |
| BKM19_RS01855 () | 242985..244754 | + | 1770 | WP_060404371.1 | ATP-binding protein | - |
| BKM19_RS01860 () | 244955..246328 | + | 1374 | WP_060404370.1 | IS1182 family transposase | - |
| BKM19_RS01865 () | 247277..247468 | + | 192 | WP_005745773.1 | hypothetical protein | - |
| BKM19_RS01870 () | 247555..247827 | - | 273 | WP_060403774.1 | hypothetical protein | - |
| BKM19_RS01875 () | 248018..248593 | + | 576 | WP_019741216.1 | hypothetical protein | - |
| BKM19_RS01885 () | 249273..250049 | - | 777 | WP_060403773.1 | hypothetical protein | - |
| BKM19_RS01895 () | 250551..250949 | - | 399 | Protein_243 | Tn3 family transposase | - |
| BKM19_RS01905 () | 251215..251316 | - | 102 | Protein_244 | helix-turn-helix domain-containing protein | - |
| BKM19_RS01910 () | 251498..253753 | + | 2256 | WP_057425783.1 | peptidase | - |
| BKM19_RS01915 () | 254033..255013 | - | 981 | WP_104721035.1 | IS5 family transposase | - |
| BKM19_RS01920 () | 255142..256245 | + | 1104 | WP_004663854.1 | IS5-like element ISPsy19 family transposase | - |
| BKM19_RS01925 () | 256403..257020 | - | 618 | WP_060402808.1 | type III effector | - |
| BKM19_RS01930 () | 257033..257428 | - | 396 | WP_060402809.1 | CesT family type III secretion system chaperone | - |
| BKM19_RS01935 () | 257648..258628 | + | 981 | WP_104721035.1 | IS5 family transposase | - |
| BKM19_RS31445 () | 258760..259128 | + | 369 | WP_080103374.1 | IS66 family insertion sequence hypothetical protein | - |
| BKM19_RS32065 () | 259125..259268 | + | 144 | Protein_252 | IS66 family insertion sequence element accessory protein TnpB | - |
| BKM19_RS01950 () | 259544..261070 | + | 1527 | WP_060403112.1 | IS66-like element ISPsy43 family transposase | - |
| BKM19_RS01955 () | 261357..263393 | + | 2037 | WP_060403111.1 | methyl-accepting chemotaxis protein | - |
| BKM19_RS01965 () | 264371..265105 | - | 735 | WP_081080488.1 | EcsC family protein | - |
| BKM19_RS01970 () | 265561..265896 | + | 336 | WP_005745763.1 | hypothetical protein | - |
| BKM19_RS01975 () | 266094..266816 | + | 723 | WP_199773133.1 | hypothetical protein | - |
| BKM19_RS01980 () | 266875..267645 | + | 771 | WP_060404514.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| BKM19_RS01985 () | 267677..268141 | + | 465 | WP_060404513.1 | GNAT family N-acetyltransferase | - |
| BKM19_RS01990 () | 268138..268857 | + | 720 | WP_004663124.1 | hypothetical protein | - |
| BKM19_RS01995 () | 268996..269466 | + | 471 | WP_004663126.1 | hypothetical protein | - |
| BKM19_RS02000 () | 269784..271331 | + | 1548 | WP_060404512.1 | M10 family metallopeptidase C-terminal domain-containing protein | - |
| BKM19_RS02005 () | 271774..272139 | + | 366 | WP_002555840.1 | DNA binding protein | - |
| BKM19_RS02010 () | 272287..272586 | + | 300 | WP_004659550.1 | hypothetical protein | - |
| BKM19_RS32070 () | 272699..272995 | - | 297 | WP_032712720.1 | hypothetical protein | - |
| BKM19_RS02015 () | 273199..273873 | + | 675 | WP_002555838.1 | HAD family hydrolase | - |
| BKM19_RS02020 () | 274105..275241 | + | 1137 | WP_060404511.1 | XRE family transcriptional regulator | - |
| BKM19_RS02025 () | 275241..275729 | + | 489 | WP_005745753.1 | DUF4411 family protein | - |
| BKM19_RS02030 () | 275726..275980 | - | 255 | WP_060404510.1 | hypothetical protein | - |
| BKM19_RS02035 () | 276064..276534 | - | 471 | WP_002555835.1 | Lrp/AsnC family transcriptional regulator | - |
| BKM19_RS02040 () | 276960..278114 | + | 1155 | WP_060404509.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|