MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP026360 Location: 1631002..1664463 Organism: Escherichia coli strain 1FA Replicon: chromosome
Accession: NZ_CP026360 Location: 1631002..1664463 Organism: Escherichia coli strain 1FA Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2R01_RS08495 () | 1627517..1628263 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C2R01_RS08500 () | 1628352..1629038 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C2R01_RS08505 () | 1629215..1629418 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C2R01_RS08510 () | 1629453..1630913 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| C2R01_RS08515 () | 1631002..1632369 | - | 1368 | Protein_1551 | MHS family MFS transporter | - |
| C2R01_RS24155 () | 1632890..1633003 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| C2R01_RS08520 () | 1633072..1633305 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C2R01_RS08525 () | 1633622..1634212 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C2R01_RS08530 () | 1634310..1634885 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C2R01_RS08535 () | 1634885..1635847 | - | 963 | WP_001027733.1 | phage tail protein | - |
| C2R01_RS08540 () | 1635798..1636367 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| C2R01_RS08550 () | 1636756..1636989 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C2R01_RS08555 () | 1637047..1637457 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C2R01_RS08560 () | 1637609..1637782 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C2R01_RS08565 () | 1637954..1638109 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| C2R01_RS24160 () | 1638188..1638253 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| C2R01_RS08570 () | 1638256..1638444 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| C2R01_RS08575 () | 1638455..1638667 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C2R01_RS08580 () | 1639030..1639527 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C2R01_RS08585 () | 1639524..1640057 | - | 534 | WP_001092971.1 | lysozyme | - |
| C2R01_RS08590 () | 1640054..1640365 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| C2R01_RS08595 () | 1640370..1640585 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C2R01_RS24440 () | 1640805..1640975 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C2R01_RS08600 () | 1641339..1641554 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C2R01_RS08605 () | 1641855..1642067 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C2R01_RS24165 () | 1642122..1642211 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| C2R01_RS08610 () | 1642489..1643241 | - | 753 | WP_001047135.1 | antitermination protein | - |
| C2R01_RS08615 () | 1643255..1644304 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| C2R01_RS08620 () | 1644306..1644584 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| C2R01_RS08625 () | 1644651..1644902 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| C2R01_RS08630 () | 1645119..1645274 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C2R01_RS08635 () | 1645346..1645633 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C2R01_RS08640 () | 1645633..1645872 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C2R01_RS08645 () | 1645897..1646202 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| C2R01_RS08650 () | 1646405..1646737 | + | 333 | WP_001301033.1 | protein FlxA | - |
| C2R01_RS24170 () | 1647174..1647323 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| C2R01_RS08660 () | 1647358..1647636 | - | 279 | Protein_1583 | hypothetical protein | - |
| C2R01_RS08665 () | 1647620..1647850 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C2R01_RS08670 () | 1647934..1648341 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C2R01_RS08675 () | 1648508..1648663 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C2R01_RS08685 () | 1648823..1649041 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| C2R01_RS08695 () | 1649609..1649797 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C2R01_RS08700 () | 1649794..1649985 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C2R01_RS08705 () | 1650078..1650845 | + | 768 | Protein_1590 | exonuclease | - |
| C2R01_RS08710 () | 1650842..1651537 | + | 696 | Protein_1591 | IS3 family transposase IS2 | Transposase |
| C2R01_RS08715 () | 1651551..1652708 | + | 1158 | Protein_1592 | Putative defective protein IntQ ; Integrase | Integrase |
| C2R01_RS08725 () | 1652896..1653915 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| C2R01_RS08730 () | 1653927..1655141 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C2R01_RS08740 () | 1655347..1655673 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| C2R01_RS08745 () | 1655808..1656149 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| C2R01_RS08750 () | 1656184..1656744 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C2R01_RS08755 () | 1656747..1657457 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| C2R01_RS08760 () | 1657565..1657870 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| C2R01_RS08765 () | 1658069..1660495 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| C2R01_RS08770 () | 1660556..1662979 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| C2R01_RS08775 () | 1662990..1663607 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C2R01_RS08780 () | 1663609..1664463 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C2R01_RS08785 () | 1664506..1665120 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C2R01_RS08790 () | 1665279..1666571 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C2R01_RS08795 () | 1666524..1667219 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C2R01_RS08800 () | 1667344..1668564 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |