MGE detailed information
MGE type: Conjugative plasmid MGE length: 97858 bp
Accession: NZ_CP024151 Location: 1..97858 Organism: Escherichia coli strain 14EC033 Replicon: plasmid p14EC033d
Accession: NZ_CP024151 Location: 1..97858 Organism: Escherichia coli strain 14EC033 Replicon: plasmid p14EC033d
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR539_RS25405 () | 66..770 | + | 705 | WP_001775011.1 | IS6 family transposase IS15DI | Transposase |
| CR539_RS28310 () | 914..1093 | - | 180 | Protein_1 | hypothetical protein | - |
| CR539_RS25415 () | 1050..1280 | + | 231 | WP_063073411.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CR539_RS25420 () | 1277..1693 | + | 417 | WP_063073410.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CR539_RS25425 () | 1767..3329 | + | 1563 | WP_063073409.1 | AAA family ATPase | - |
| CR539_RS25430 () | 3314..4336 | + | 1023 | WP_063073408.1 | hypothetical protein | - |
| CR539_RS25435 () | 4623..4853 | + | 231 | WP_001261276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CR539_RS25440 () | 4850..4945 | + | 96 | Protein_7 | VapC toxin family PIN domain ribonuclease | - |
| CR539_RS25445 () | 5004..5788 | - | 785 | Protein_8 | IS21-like element helper ATPase IstB | - |
| CR539_RS25450 () | 5788..6441 | - | 654 | Protein_9 | IS21 family transposase IS21 | Transposase |
| CR539_RS25460 () | 8197..8838 | + | 642 | WP_089533208.1 | hypothetical protein | - |
| CR539_RS25475 () | 10013..10990 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| CR539_RS25480 () | 11275..12015 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| CR539_RS25485 () | 12136..12396 | - | 261 | Protein_13 | hypothetical protein | - |
| CR539_RS25490 () | 12772..14271 | - | 1500 | WP_063073405.1 | alpha/beta hydrolase | - |
| CR539_RS25495 () | 14364..15313 | - | 950 | Protein_15 | Outer membrane protease OmpP | VF |
| CR539_RS25500 () | 15566..16546 | - | 981 | WP_000019440.1 | IS5 family transposase ISKpn26 | Transposase |
| CR539_RS25510 () | 18367..22482 | + | 4116 | WP_063073392.1 | Outer membrane protein IcsA autotransporter | VF |
| CR539_RS25515 () | 22584..23564 | + | 981 | WP_000019440.1 | IS5 family transposase ISKpn26 | Transposase |
| CR539_RS25520 () | 23830..24400 | - | 571 | Protein_20 | IS3 family transposase | - |
| CR539_RS25525 () | 24453..24953 | + | 501 | Protein_21 | IS21 family transposase IS100kyp | Transposase |
| CR539_RS25530 () | 24950..25645 | + | 696 | WP_074440817.1 | IS21 family transposase IS100kyp | Transposase |
| CR539_RS25540 () | 25864..26670 | - | 807 | WP_020219156.1 | site-specific integrase | - |
| CR539_RS25545 () | 26671..26976 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CR539_RS25550 () | 26978..27196 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CR539_RS25565 () | 28012..28302 | - | 291 | WP_032248853.1 | hypothetical protein | - |
| CR539_RS25575 () | 28601..29290 | - | 690 | Protein_27 | IS3 family transposase ISEhe3 | Transposase |
| CR539_RS25580 () | 29325..30059 | - | 735 | Protein_28 | IS66 family transposase ISEc8 | Transposase |
| CR539_RS25585 () | 30123..31237 | + | 1115 | WP_085947756.1 | IS3 family transposase IS3 | Transposase |
| CR539_RS25590 () | 31428..32125 | - | 698 | Protein_30 | IS1 family transposase IS1G | Transposase |
| CR539_RS25600 () | 32384..32641 | - | 258 | WP_001032733.1 | hypothetical protein | - |
| CR539_RS25605 () | 32710..34407 | - | 1698 | WP_000401034.1 | sulfatase | - |
| CR539_RS25610 () | 34503..35639 | - | 1137 | WP_033804283.1 | Outer membrane porin protein OmpD | VF |
| CR539_RS25620 () | 36193..37421 | + | 1229 | WP_167654659.1 | IS3 family transposase IS2 | Transposase |
| CR539_RS25625 () | 37490..37802 | + | 313 | Protein_35 | IS66 family insertion sequence element accessory protein TnpB | - |
| CR539_RS25630 () | 37950..38438 | + | 489 | Protein_36 | IS91 family transposase ISSbo1 | Transposase |
| CR539_RS25635 () | 38705..38980 | - | 276 | WP_063073486.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CR539_RS25640 () | 38980..39264 | - | 285 | WP_062894229.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CR539_RS25650 () | 40175..41032 | - | 858 | WP_019842754.1 | incFII family plasmid replication initiator RepA | - |
| CR539_RS25655 () | 41025..41507 | - | 483 | WP_074149688.1 | hypothetical protein | - |
| CR539_RS25660 () | 41500..41574 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| CR539_RS25670 () | 41806..42063 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| CR539_RS25675 () | 42326..42529 | - | 204 | Protein_43 | Hok/Gef family protein | - |
| - () | 42516..42577 | + | 62 | NuclAT_1 | - | - |
| - () | 42516..42577 | + | 62 | NuclAT_1 | - | - |
| - () | 42516..42577 | + | 62 | NuclAT_1 | - | - |
| - () | 42516..42577 | + | 62 | NuclAT_1 | - | - |
| CR539_RS25685 () | 43160..43372 | - | 213 | WP_032084501.1 | hypothetical protein | - |
| CR539_RS25690 () | 43506..44066 | - | 561 | WP_063073483.1 | fertility inhibition protein FinO | - |
| CR539_RS25695 () | 44121..44867 | - | 747 | WP_063073482.1 | conjugal transfer pilus acetylase TraX | - |
| CR539_RS25700 () | 44887..50157 | - | 5271 | WP_063073481.1 | Multifunctional conjugation protein TraI | Relaxase |
| CR539_RS25705 () | 50157..52319 | - | 2163 | WP_001332348.1 | type IV conjugative transfer system coupling protein TraD | - |
| CR539_RS25710 () | 52571..53302 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| CR539_RS25715 () | 53316..53825 | - | 510 | WP_063073480.1 | conjugal transfer entry exclusion protein TraS | - |
| CR539_RS25720 () | 53822..56647 | - | 2826 | WP_001007030.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CR539_RS25725 () | 56644..58017 | - | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| CR539_RS25730 () | 58017..58379 | - | 363 | WP_074149687.1 | P-type conjugative transfer protein TrbJ | - |
| CR539_RS25735 () | 58309..58854 | - | 546 | WP_000052614.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CR539_RS25740 () | 58841..59125 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CR539_RS25745 () | 59244..59591 | - | 348 | WP_001287893.1 | conjugal transfer protein TrbA | - |
| CR539_RS25750 () | 59607..60350 | - | 744 | WP_063073478.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CR539_RS25755 () | 60343..60600 | - | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| CR539_RS25760 () | 60627..62435 | - | 1809 | WP_033804337.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CR539_RS25765 () | 62432..63070 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CR539_RS25770 () | 63079..64071 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| CR539_RS25775 () | 64068..64700 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| CR539_RS25780 () | 64697..65083 | - | 387 | WP_001585100.1 | type-F conjugative transfer system protein TrbI | - |
| CR539_RS25785 () | 65080..67707 | - | 2628 | WP_033804336.1 | type IV secretion system protein TraC | - |
| CR539_RS25790 () | 67866..68087 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| CR539_RS25795 () | 68222..68737 | - | 516 | WP_000724020.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CR539_RS25800 () | 68737..69102 | - | 366 | WP_021519753.1 | conjugal transfer protein TrbD | - |
| CR539_RS25805 () | 69041..69628 | - | 588 | WP_063073477.1 | conjugal transfer protein TraP | - |
| CR539_RS25810 () | 69618..71045 | - | 1428 | WP_000146636.1 | conjugal transfer protein TraB | - |
| CR539_RS25815 () | 71045..71749 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| CR539_RS25820 () | 71760..72326 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| CR539_RS25825 () | 72348..72659 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CR539_RS25830 () | 72674..73039 | - | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| CR539_RS25835 () | 73073..73300 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| CR539_RS25840 () | 73395..74081 | - | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| CR539_RS25845 () | 74272..74655 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| CR539_RS25850 () | 74932..75579 | + | 648 | WP_148726238.1 | hypothetical protein | VF |
| CR539_RS25855 () | 75876..76697 | - | 822 | WP_033804334.1 | DUF945 domain-containing protein | - |
| CR539_RS25860 () | 76816..77103 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| CR539_RS28315 () | 77128..77334 | - | 207 | WP_033804333.1 | hypothetical protein | - |
| CR539_RS25880 () | 78025..78183 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 78227..78451 | - | 225 | NuclAT_0 | - | - |
| - () | 78227..78451 | - | 225 | NuclAT_0 | - | - |
| - () | 78227..78451 | - | 225 | NuclAT_0 | - | - |
| - () | 78227..78451 | - | 225 | NuclAT_0 | - | - |
| CR539_RS28130 () | 78263..78451 | + | 189 | WP_063073474.1 | hypothetical protein | - |
| CR539_RS25885 () | 78463..79182 | - | 720 | WP_001276240.1 | plasmid SOS inhibition protein A | - |
| CR539_RS25890 () | 79179..79613 | - | 435 | WP_000845907.1 | conjugation system SOS inhibitor PsiB | - |
| CR539_RS25895 () | 79668..81626 | - | 1959 | WP_063072993.1 | ParB/RepB/Spo0J family partition protein | - |
| CR539_RS25900 () | 81691..81924 | - | 234 | WP_000006030.1 | DUF905 family protein | - |
| CR539_RS25905 () | 81986..82438 | - | 453 | WP_000290842.1 | single-stranded DNA-binding protein | - |
| CR539_RS28320 () | 82464..82670 | - | 207 | WP_000275853.1 | hypothetical protein | - |
| CR539_RS25930 () | 83081..83305 | - | 225 | WP_016238251.1 | hypothetical protein | - |
| CR539_RS25935 () | 83331..83894 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| CR539_RS25940 () | 83942..85303 | - | 1362 | WP_014106968.1 | DUF3560 domain-containing protein | - |
| CR539_RS25945 () | 85355..85585 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CR539_RS25960 () | 86623..86814 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CR539_RS25965 () | 86811..87245 | - | 435 | WP_014106967.1 | DUF1380 family protein | - |
| CR539_RS25970 () | 87292..87594 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CR539_RS28135 () | 88134..88910 | - | 777 | WP_063073488.1 | hypothetical protein | - |
| CR539_RS25985 () | 88961..89395 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| CR539_RS25990 () | 89409..89630 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CR539_RS25995 () | 89631..90314 | - | 684 | WP_001775017.1 | DNA methylase | - |
| CR539_RS26005 () | 90391..90696 | - | 306 | WP_063073472.1 | hypothetical protein | - |
| CR539_RS26010 () | 90700..91602 | - | 903 | WP_148934335.1 | DUF1281 domain-containing protein | - |
| CR539_RS26020 () | 92020..92268 | + | 249 | WP_001775014.1 | DinI-like family protein | - |
| CR539_RS26025 () | 92265..92702 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CR539_RS26030 () | 92702..93972 | + | 1271 | Protein_104 | Y-family DNA polymerase | - |
| CR539_RS26035 () | 93977..94369 | - | 393 | WP_063073471.1 | plasmid partitioning/stability family protein | - |
| CR539_RS26040 () | 94374..95345 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| CR539_RS26045 () | 95574..96218 | + | 645 | WP_000633913.1 | AAA family ATPase | - |
| CR539_RS26050 () | 96212..96487 | + | 276 | WP_050858693.1 | hypothetical protein | - |
| CR539_RS26055 () | 96639..97430 | - | 792 | WP_096099211.1 | site-specific integrase | - |
| CR539_RS26060 () | 97427..97858 | - | 432 | WP_001707302.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|