MGE detailed information
MGE type: Conjugative plasmid MGE length: 135053 bp
Accession: NZ_CP023854 Location: 1..135053 Organism: Escherichia coli strain 2/0 Replicon: plasmid p2_0.1
Accession: NZ_CP023854 Location: 1..135053 Organism: Escherichia coli strain 2/0 Replicon: plasmid p2_0.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRT29_RS25755 () | 408..626 | + | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CRT29_RS25760 () | 628..933 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CRT29_RS25765 () | 934..1740 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| CRT29_RS25770 () | 2514..3269 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CRT29_RS25775 () | 3857..5023 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CRT29_RS25780 () | 5023..5994 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CRT29_RS25795 () | 6861..7763 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CRT29_RS25800 () | 7767..8071 | + | 305 | Protein_7 | hypothetical protein | - |
| CRT29_RS25805 () | 8148..8831 | + | 684 | WP_000086185.1 | DNA methylase | - |
| CRT29_RS25810 () | 8832..9053 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| CRT29_RS25815 () | 9067..9501 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| CRT29_RS25820 () | 9552..10328 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| CRT29_RS25830 () | 10868..11170 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| CRT29_RS25835 () | 11217..11639 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CRT29_RS25840 () | 11636..11827 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| CRT29_RS25850 () | 12862..13092 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CRT29_RS25855 () | 13144..14505 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| CRT29_RS25860 () | 14553..15116 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| CRT29_RS25865 () | 15142..15354 | + | 213 | WP_001348622.1 | hypothetical protein | - |
| CRT29_RS26965 () | 15517..15852 | + | 336 | WP_013023876.1 | hypothetical protein | - |
| CRT29_RS25890 () | 16649..18550 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| CRT29_RS25895 () | 18700..19197 | + | 498 | WP_042045560.1 | single-stranded DNA-binding protein | - |
| CRT29_RS25900 () | 19260..19493 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| CRT29_RS25905 () | 19559..21517 | + | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| CRT29_RS25910 () | 21572..22006 | + | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| CRT29_RS25915 () | 22003..22722 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| - () | 22734..22836 | + | 103 | NuclAT_0 | - | - |
| - () | 22734..22836 | + | 103 | NuclAT_0 | - | - |
| - () | 22734..22836 | + | 103 | NuclAT_0 | - | - |
| - () | 22734..22836 | + | 103 | NuclAT_0 | - | - |
| CRT29_RS25920 () | 22882..24251 | + | 1370 | WP_085947770.1 | IS3 family transposase IS150 | Transposase |
| - () | 24276..24314 | + | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 24276..24314 | + | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 24276..24314 | + | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 24276..24314 | + | 39 | NuclAT_1 | - | Antitoxin Detail |
| CRT29_RS25925 () | 24358..24516 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CRT29_RS26970 () | 24959..25294 | + | 336 | WP_013023876.1 | hypothetical protein | - |
| CRT29_RS26975 () | 25207..25413 | + | 207 | WP_000275859.1 | hypothetical protein | - |
| CRT29_RS25945 () | 25438..25725 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CRT29_RS25950 () | 25844..26665 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CRT29_RS25955 () | 26962..27564 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| CRT29_RS25960 () | 27895..28278 | + | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| CRT29_RS25965 () | 28412..29089 | + | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| CRT29_RS25970 () | 29177..29404 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CRT29_RS25975 () | 29438..29800 | + | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| CRT29_RS25980 () | 29805..30116 | + | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| CRT29_RS25985 () | 30138..30704 | + | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| CRT29_RS25990 () | 30715..31419 | + | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| CRT29_RS25995 () | 31419..32870 | + | 1452 | WP_000146687.1 | conjugal transfer protein TraB | - |
| CRT29_RS26000 () | 32839..33426 | + | 588 | WP_071587349.1 | conjugal transfer protein TraP | - |
| CRT29_RS26005 () | 33365..33724 | + | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
| CRT29_RS26010 () | 33724..34239 | + | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CRT29_RS26015 () | 34374..34595 | + | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| CRT29_RS26020 () | 34755..37382 | + | 2628 | WP_001064258.1 | type IV secretion system protein TraC | - |
| CRT29_RS26025 () | 37379..37765 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| CRT29_RS26030 () | 37762..38394 | + | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| CRT29_RS26035 () | 38391..39383 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| CRT29_RS26040 () | 39413..39718 | + | 306 | WP_000224413.1 | hypothetical protein | - |
| CRT29_RS26045 () | 39727..40365 | + | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CRT29_RS26050 () | 40362..42212 | + | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CRT29_RS26055 () | 42239..42496 | + | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
| CRT29_RS26060 () | 42489..43232 | + | 744 | WP_001030401.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CRT29_RS26065 () | 43362..43574 | + | 213 | Protein_54 | IS5/IS1182 family transposase | - |
| CRT29_RS26070 () | 43617..45152 | - | 1536 | WP_001333339.1 | IS66 family transposase ISEc22 | Transposase |
| CRT29_RS26075 () | 45201..45548 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| CRT29_RS26080 () | 45545..45949 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| CRT29_RS26090 () | 46032..47717 | + | 1686 | Protein_58 | conjugal transfer protein TraG | - |
| CRT29_RS26095 () | 47736..48233 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| CRT29_RS26100 () | 48265..48996 | + | 732 | WP_000850429.1 | complement resistance protein TraT | - |
| CRT29_RS26105 () | 49199..49978 | + | 780 | WP_000199914.1 | hypothetical protein | - |
| CRT29_RS26110 () | 49975..51219 | + | 1245 | Protein_62 | type IV conjugative transfer system coupling protein TraD | - |
| CRT29_RS26120 () | 51272..51976 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRT29_RS26125 () | 52041..52721 | - | 681 | Protein_64 | IS91 family transposase ISAzo26 | Transposase |
| CRT29_RS26130 () | 52879..53352 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| CRT29_RS26135 () | 53483..54271 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CRT29_RS26140 () | 54477..54824 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CRT29_RS26145 () | 54818..55657 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CRT29_RS26155 () | 55785..55988 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| CRT29_RS26160 () | 56144..57349 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| CRT29_RS26165 () | 57360..57665 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| CRT29_RS26855 () | 57709..57774 | + | 66 | Protein_72 | EAL domain-containing protein | - |
| CRT29_RS26175 () | 57892..58656 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| CRT29_RS26190 () | 59149..59733 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CRT29_RS26195 () | 59733..60971 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| CRT29_RS26200 () | 60968..61873 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CRT29_RS26210 () | 61995..62699 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRT29_RS26215 () | 62858..63139 | - | 282 | Protein_78 | IS91 family transposase ISPps1 | Transposase |
| CRT29_RS26225 () | 63389..64093 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CRT29_RS26230 () | 64149..67775 | + | 3627 | Protein_80 | Multifunctional conjugation protein TraI | Relaxase |
| CRT29_RS26235 () | 67795..68541 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| CRT29_RS26240 () | 68596..69156 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| CRT29_RS26245 () | 69287..69499 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| CRT29_RS26860 () | 70012..70298 | + | 287 | Protein_84 | DUF2726 domain-containing protein | - |
| - () | 70265..70325 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 70265..70325 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 70265..70325 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 70265..70325 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| CRT29_RS26260 () | 70370..70504 | + | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CRT29_RS26265 () | 70801..71055 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| CRT29_RS26270 () | 71215..71961 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CRT29_RS26275 () | 71976..73517 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| CRT29_RS26980 () | 73748..73882 | + | 135 | Protein_89 | protein CopA/IncA | - |
| CRT29_RS26285 () | 73879..73953 | + | 75 | WP_014966221.1 | RepA leader peptide Tap | - |
| CRT29_RS26290 () | 73946..74803 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| CRT29_RS26300 () | 75742..76395 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CRT29_RS26305 () | 76488..76745 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CRT29_RS26310 () | 76678..77079 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CRT29_RS26315 () | 77364..78674 | + | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| CRT29_RS26320 () | 78703..78801 | + | 99 | Protein_96 | IS1 family transposase | - |
| CRT29_RS26325 () | 78951..79811 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CRT29_RS26330 () | 79994..80332 | - | 339 | Protein_98 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CRT29_RS26335 () | 80396..81100 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CRT29_RS26340 () | 81152..82243 | + | 1092 | Protein_100 | Tetracycline resistance protein, class B | ARG |
| CRT29_RS26345 () | 82356..82949 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| CRT29_RS26350 () | 83082..83453 | + | 372 | WP_035689358.1 | Transposon Tn10 TetD protein | VF |
| CRT29_RS26355 () | 83463..84626 | - | 1164 | Protein_103 | IS4 family transposase IS10R | Transposase |
| CRT29_RS26360 () | 84641..85338 | - | 698 | Protein_104 | IS1 family transposase IS1X2 | Transposase |
| CRT29_RS26985 () | 85538..85651 | + | 114 | Protein_105 | IS6 family transposase | - |
| CRT29_RS26375 () | 85801..85959 | + | 159 | WP_000449408.1 | DsbA family protein | - |
| CRT29_RS26380 () | 85949..86455 | + | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| CRT29_RS26385 () | 86638..87453 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| CRT29_RS26395 () | 87800..89686 | + | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| CRT29_RS26400 () | 89727..90254 | + | 528 | WP_000178050.1 | iron transporter | - |
| CRT29_RS26405 () | 90358..91737 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| CRT29_RS26410 () | 91740..93023 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| CRT29_RS26415 () | 93013..94143 | + | 1131 | WP_000729220.1 | ABC transporter permease | - |
| CRT29_RS26420 () | 94148..94843 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| CRT29_RS26425 () | 94830..95315 | + | 486 | WP_001267177.1 | TlpA family protein disulfide reductase | - |
| CRT29_RS26430 () | 95340..95825 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| CRT29_RS26435 () | 95947..96477 | + | 531 | Protein_117 | histidine-type phosphatase | - |
| CRT29_RS26440 () | 96535..97239 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CRT29_RS26445 () | 97264..98460 | + | 1197 | Protein_119 | IS3 family transposase | - |
| CRT29_RS26450 () | 98482..98715 | + | 234 | Protein_120 | Tn3 family transposase ISPsy39 | Transposase |
| CRT29_RS26455 () | 98792..99100 | + | 309 | Protein_121 | IS4 family transposase ISEc13 | Transposase |
| CRT29_RS26460 () | 99159..100469 | - | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| CRT29_RS26465 () | 100462..101535 | - | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| CRT29_RS26470 () | 101541..102365 | - | 825 | WP_000922702.1 | phosphodiesterase | - |
| CRT29_RS26475 () | 102376..103263 | - | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| CRT29_RS26480 () | 103253..104131 | - | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| CRT29_RS26485 () | 104262..104702 | - | 441 | Protein_127 | zinc-binding dehydrogenase | - |
| CRT29_RS26490 () | 104676..104870 | + | 195 | WP_000796505.1 | hypothetical protein | - |
| CRT29_RS26495 () | 105103..105993 | + | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| CRT29_RS26500 () | 106018..106398 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| CRT29_RS26505 () | 106431..107396 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| CRT29_RS26510 () | 107442..108194 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| CRT29_RS26515 () | 108799..109083 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| CRT29_RS26520 () | 109083..109358 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CRT29_RS26525 () | 109464..109757 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| CRT29_RS26530 () | 109792..109920 | - | 129 | Protein_136 | IS481 family transposase | - |
| CRT29_RS26535 () | 109953..111122 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| CRT29_RS26545 () | 111615..111922 | + | 308 | Protein_138 | type II toxin-antitoxin system ParD family antitoxin | - |
| CRT29_RS26555 () | 112265..112447 | + | 183 | WP_042065278.1 | hypothetical protein | - |
| CRT29_RS26560 () | 112568..113308 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| CRT29_RS26565 () | 113593..114570 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| CRT29_RS26575 () | 115366..115779 | - | 414 | Protein_142 | IS3 family transposase ISLad1 | Transposase |
| CRT29_RS26580 () | 115703..116062 | - | 360 | WP_001513660.1 | hypothetical protein | - |
| CRT29_RS26585 () | 116090..116269 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| CRT29_RS26590 () | 116274..116654 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CRT29_RS26595 () | 116654..116875 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CRT29_RS26600 () | 117058..118614 | + | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| CRT29_RS26605 () | 118611..119882 | + | 1272 | WP_023142242.1 | restriction endonuclease subunit S | - |
| CRT29_RS26610 () | 120004..123120 | + | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| CRT29_RS26615 () | 123334..124031 | + | 698 | Protein_150 | IS1 family transposase IS1G | Transposase |
| CRT29_RS26620 () | 124168..125100 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| CRT29_RS26625 () | 125104..126099 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| CRT29_RS26630 () | 126564..128702 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| CRT29_RS26635 () | 128864..129280 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CRT29_RS26640 () | 129277..129507 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CRT29_RS26650 () | 129814..132933 | + | 3120 | WP_023909028.1 | hypothetical protein | - |
| CRT29_RS26655 () | 133196..134329 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CRT29_RS26660 () | 134349..134633 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| CRT29_RS26665 () | 134630..134827 | - | 198 | WP_000215657.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|