MGE detailed information
MGE type: Conjugative plasmid MGE length: 143617 bp
Accession: NZ_CP010126 Location: 1..143617 Organism: Escherichia coli strain C8 Replicon: plasmid A
Accession: NZ_CP010126 Location: 1..143617 Organism: Escherichia coli strain C8 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG30_RS25325 () | 529..1746 | + | 1218 | WP_073534262.1 | hypothetical protein | - |
| RG30_RS25330 () | 1960..2751 | + | 792 | WP_073534263.1 | alpha/beta hydrolase | - |
| RG30_RS25335 () | 3108..3632 | - | 525 | WP_073534264.1 | hypothetical protein | VF |
| RG30_RS25340 () | 4022..8113 | + | 4092 | WP_073534265.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| RG30_RS25345 () | 8353..8574 | + | 222 | WP_149026015.1 | DUF1471 domain-containing protein | - |
| RG30_RS27490 () | 8706..9007 | + | 302 | Protein_6 | peroxidase | - |
| RG30_RS25350 () | 9096..9389 | + | 294 | WP_148713380.1 | transposase | - |
| RG30_RS25355 () | 9474..9821 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| RG30_RS25360 () | 9871..11277 | + | 1407 | WP_073534267.1 | IS66 family transposase ISEc8 | Transposase |
| RG30_RS25365 () | 11412..11834 | + | 423 | Protein_10 | IS21 family transposase IS100kyp | Transposase |
| RG30_RS25370 () | 11967..12152 | + | 186 | Protein_11 | IS3 family transposase IS2 | Transposase |
| RG30_RS25375 () | 12434..13621 | + | 1188 | WP_073534268.1 | peptide antibiotic transporter SbmA | - |
| RG30_RS25380 () | 14227..15135 | + | 909 | WP_073534269.1 | DMT family transporter | - |
| RG30_RS26980 () | 15488..16032 | + | 545 | Protein_14 | Alcohol dehydrogenase 2 | VF |
| RG30_RS26985 () | 16356..17886 | - | 1531 | Protein_15 | IS66 family transposase ISEc49 | Transposase |
| RG30_RS25415 () | 17929..18309 | - | 381 | WP_073534273.1 | IS66 family transposase ISEc49 | Transposase |
| RG30_RS25420 () | 18296..18460 | - | 165 | Protein_17 | IS66 family insertion sequence element accessory protein TnpB | - |
| RG30_RS27500 () | 18461..19551 | - | 1091 | Protein_18 | IS3 family transposase | - |
| RG30_RS27745 () | 19663..20195 | + | 533 | Protein_19 | Tyrosine recombinase XerD | VF |
| RG30_RS25440 () | 21150..22259 | + | 1110 | WP_073534277.1 | porin OmpC | - |
| RG30_RS25445 () | 22421..23188 | - | 768 | WP_073534278.1 | helix-turn-helix domain-containing protein | - |
| RG30_RS25450 () | 23610..23846 | - | 237 | WP_073534354.1 | hypothetical protein | - |
| RG30_RS25455 () | 24389..25792 | - | 1404 | WP_073534279.1 | ISKra4 family transposase ISEc51 | Transposase |
| RG30_RS25460 () | 25946..26482 | - | 537 | Protein_24 | plasmid pRiA4b ORF-3 family protein | - |
| RG30_RS25465 () | 26575..26853 | + | 279 | Protein_25 | ATP-binding protein | - |
| RG30_RS25470 () | 26915..27160 | + | 246 | Protein_26 | IS91 family transposase | - |
| RG30_RS25475 () | 27745..31242 | + | 3498 | WP_073534280.1 | Outer membrane protein IcsA autotransporter | VF |
| RG30_RS25485 () | 31530..32039 | - | 510 | Protein_28 | hypothetical protein | - |
| RG30_RS25495 () | 32480..34015 | + | 1536 | WP_073534282.1 | pore-forming bacteriocin colicin B | - |
| RG30_RS25500 () | 34033..34560 | - | 528 | WP_000203274.1 | colicin B immunity protein | - |
| RG30_RS25510 () | 34806..35621 | + | 816 | WP_001382745.1 | lipid II-degrading bacteriocin colicin M | - |
| RG30_RS25515 () | 35671..36024 | - | 354 | WP_000864816.1 | colicin M immunity protein | - |
| RG30_RS25520 () | 36197..37006 | - | 810 | WP_000016972.1 | site-specific integrase | - |
| RG30_RS25525 () | 37007..37312 | - | 306 | WP_001159873.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| RG30_RS25530 () | 37314..37532 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| RG30_RS25540 () | 38126..38356 | + | 231 | WP_001261277.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| RG30_RS25545 () | 38353..38769 | + | 417 | WP_077899813.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| RG30_RS25550 () | 38828..39268 | - | 441 | Protein_38 | transposase family protein | - |
| RG30_RS27515 () | 39440..39575 | - | 136 | Protein_39 | transposase | - |
| RG30_RS25555 () | 40348..40758 | - | 411 | WP_073534286.1 | subtilase cytotoxin subunit B-like protein | - |
| RG30_RS25560 () | 40868..41593 | - | 726 | WP_073534356.1 | Pertussis toxin subunit 1 | VF |
| RG30_RS25595 () | 44443..44691 | - | 249 | Protein_44 | IS3 family transposase ISSfl10 | Transposase |
| RG30_RS25600 () | 44857..45615 | - | 759 | WP_073534291.1 | hypothetical protein | VF |
| RG30_RS25605 () | 45996..46787 | + | 792 | WP_073534292.1 | alpha/beta hydrolase | - |
| RG30_RS25615 () | 47328..48008 | + | 681 | Protein_47 | transposase | - |
| RG30_RS25620 () | 48128..49411 | - | 1284 | WP_149026019.1 | hypothetical protein | - |
| RG30_RS25625 () | 49425..49940 | - | 516 | WP_149026020.1 | type 1 fimbrial protein | - |
| RG30_RS25630 () | 49931..50617 | - | 687 | WP_073534295.1 | molecular chaperone | - |
| RG30_RS25635 () | 50608..53115 | - | 2508 | WP_001239411.1 | Outer membrane usher protein SfmD | VF |
| RG30_RS25640 () | 53144..53587 | - | 444 | WP_000665199.1 | molecular chaperone | - |
| RG30_RS25645 () | 53568..54272 | - | 705 | WP_073534296.1 | molecular chaperone | - |
| RG30_RS25650 () | 54331..54930 | - | 600 | WP_073534297.1 | putative major fimbrial subunit LpfA | VF |
| RG30_RS25655 () | 55237..56013 | + | 777 | WP_073534298.1 | CFA/I fimbrial subunit D | VF |
| RG30_RS25660 () | 56178..56297 | + | 120 | WP_077899815.1 | hypothetical protein | - |
| RG30_RS25665 () | 56566..57375 | + | 810 | WP_073534299.1 | AraC family transcriptional regulator | - |
| RG30_RS25675 () | 57854..58594 | + | 741 | WP_073534300.1 | tyrosine-type recombinase/integrase | - |
| RG30_RS25680 () | 58879..59856 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| RG30_RS25690 () | 60945..61472 | + | 528 | WP_001045099.1 | Pap fimbrial major pilin protein | VF |
| RG30_RS25695 () | 61548..62135 | + | 588 | WP_073534301.1 | PAP fimbrial minor pilin protein | VF |
| RG30_RS25700 () | 62256..64766 | + | 2511 | WP_073534302.1 | Outer membrane usher protein PapC | VF |
| RG30_RS25705 () | 64835..65566 | + | 732 | WP_073534303.1 | Chaperone protein PapD | VF |
| RG30_RS25710 () | 65603..66118 | + | 516 | WP_019842693.1 | hypothetical protein | VF |
| RG30_RS25715 () | 66150..66659 | + | 510 | WP_187658841.1 | Minor fimbrial protein PrsF | VF |
| RG30_RS25720 () | 66687..67679 | + | 993 | WP_073534304.1 | nuclease PIN | - |
| RG30_RS25730 () | 68346..68663 | + | 318 | WP_000845366.1 | Major pilu subunit operon regulatory protein PapB | VF |
| RG30_RS25735 () | 69248..69496 | + | 249 | WP_000467268.1 | DUF883 family protein | - |
| RG30_RS25740 () | 69568..69921 | + | 354 | WP_000990989.1 | hypothetical protein | - |
| RG30_RS25745 () | 70005..70406 | + | 402 | WP_001258981.1 | phage holin family protein | - |
| RG30_RS25750 () | 70403..70696 | + | 294 | WP_001097404.1 | YqjK-like family protein | - |
| RG30_RS25755 () | 71041..72921 | + | 1881 | WP_073534305.1 | colicin | - |
| RG30_RS25760 () | 72943..73278 | - | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| RG30_RS25770 () | 73407..73754 | + | 348 | WP_073534306.1 | hypothetical protein | - |
| RG30_RS25775 () | 73774..74163 | - | 390 | Protein_75 | hypothetical protein | - |
| RG30_RS25780 () | 74316..74767 | + | 452 | Protein_76 | N-acetyltransferase | - |
| RG30_RS25790 () | 75156..75914 | - | 759 | Protein_77 | IS21 family transposase | - |
| RG30_RS25800 () | 76036..76233 | + | 198 | Protein_78 | CcdB family protein | - |
| RG30_RS25805 () | 76696..77862 | + | 1167 | WP_001519994.1 | Sporulation initiation inhibitor protein Soj | VF |
| RG30_RS25810 () | 77862..78833 | + | 972 | WP_001519995.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| RG30_RS25825 () | 79764..80066 | + | 303 | WP_077899827.1 | antirestriction protein | - |
| RG30_RS25830 () | 80113..80535 | + | 423 | WP_001587500.1 | DUF1380 family protein | - |
| RG30_RS25835 () | 80532..80723 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| RG30_RS27755 () | 81288..81494 | + | 207 | WP_000275848.1 | hypothetical protein | - |
| RG30_RS25850 () | 81520..82047 | + | 528 | WP_073534308.1 | single-stranded DNA-binding protein | - |
| RG30_RS25855 () | 82113..82337 | + | 225 | WP_073534359.1 | DUF905 family protein | - |
| RG30_RS25860 () | 82403..84367 | + | 1965 | WP_001587501.1 | ParB/RepB/Spo0J family partition protein | - |
| RG30_RS25865 () | 84422..84856 | + | 435 | WP_073534309.1 | conjugation system SOS inhibitor PsiB | - |
| RG30_RS25870 () | 84853..85572 | + | 720 | WP_029400523.1 | plasmid SOS inhibition protein A | - |
| - () | 85584..85778 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85584..85778 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85584..85778 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85584..85778 | + | 195 | NuclAT_0 | - | Antitoxin Detail |
| RG30_RS25880 () | 85843..86001 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| RG30_RS25890 () | 86548..86833 | + | 286 | Protein_91 | hypothetical protein | - |
| RG30_RS27760 () | 86953..87773 | + | 821 | Protein_92 | DUF945 domain-containing protein | - |
| RG30_RS25900 () | 88069..88716 | - | 648 | WP_149026021.1 | hypothetical protein | VF |
| RG30_RS25915 () | 88992..89375 | + | 384 | WP_073534310.1 | relaxosome protein TraM | - |
| RG30_RS25920 () | 89570..90217 | + | 648 | WP_073534311.1 | transcriptional regulator TraJ family protein | - |
| RG30_RS25925 () | 90336..90563 | + | 228 | WP_033800806.1 | conjugal transfer relaxosome protein TraY | - |
| RG30_RS25930 () | 90597..90956 | + | 360 | WP_073534312.1 | type IV conjugative transfer system pilin TraA | - |
| RG30_RS25935 () | 90971..91282 | + | 312 | WP_000012118.1 | type IV conjugative transfer system protein TraL | - |
| RG30_RS25940 () | 91304..91870 | + | 567 | WP_059257107.1 | type IV conjugative transfer system protein TraE | - |
| RG30_RS25945 () | 91881..92585 | + | 705 | WP_149012676.1 | type-F conjugative transfer system secretin TraK | - |
| RG30_RS25950 () | 92585..94012 | + | 1428 | WP_073534313.1 | conjugal transfer protein TraB | - |
| RG30_RS25955 () | 94002..94586 | + | 585 | WP_059257104.1 | conjugal transfer protein TraP | - |
| RG30_RS25960 () | 94525..94893 | + | 369 | WP_149026022.1 | conjugal transfer protein TrbD | - |
| RG30_RS25965 () | 94890..95405 | + | 516 | WP_073534315.1 | type IV conjugative transfer system lipoprotein TraV | - |
| RG30_RS25970 () | 95540..95761 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| RG30_RS25975 () | 95921..98548 | + | 2628 | WP_073534316.1 | type IV secretion system protein TraC | - |
| RG30_RS25980 () | 98545..98931 | + | 387 | WP_073534317.1 | type-F conjugative transfer system protein TrbI | - |
| RG30_RS25985 () | 98928..99560 | + | 633 | WP_073534318.1 | type-F conjugative transfer system protein TraW | - |
| RG30_RS25990 () | 99557..100549 | + | 993 | WP_059257098.1 | conjugal transfer pilus assembly protein TraU | - |
| RG30_RS25995 () | 100590..100913 | + | 324 | WP_077899828.1 | hypothetical protein | - |
| RG30_RS26000 () | 100906..101358 | + | 453 | WP_073534320.1 | hypothetical protein | - |
| RG30_RS26005 () | 101386..102024 | + | 639 | WP_073534321.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| RG30_RS26010 () | 102021..102392 | + | 372 | WP_059257095.1 | hypothetical protein | - |
| RG30_RS26015 () | 102417..102839 | + | 423 | WP_073534322.1 | HNH endonuclease | - |
| RG30_RS26020 () | 102836..104644 | + | 1809 | WP_073534323.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| RG30_RS26025 () | 104671..104928 | + | 258 | WP_073534324.1 | conjugal transfer protein TrbE | - |
| RG30_RS26030 () | 104921..105664 | + | 744 | WP_059257092.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| RG30_RS26035 () | 105678..106019 | + | 342 | WP_023181031.1 | conjugal transfer protein TrbA | - |
| RG30_RS26040 () | 106000..106335 | - | 336 | WP_059257091.1 | hypothetical protein | - |
| RG30_RS26045 () | 106417..106701 | + | 285 | WP_059257090.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| RG30_RS26050 () | 106688..107239 | + | 552 | WP_073534325.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| RG30_RS26055 () | 107255..107785 | + | 531 | WP_073534326.1 | hypothetical protein | - |
| RG30_RS26065 () | 108174..109592 | + | 1419 | WP_073534328.1 | conjugal transfer protein TraH | - |
| RG30_RS26070 () | 109589..112426 | + | 2838 | WP_073534329.1 | conjugal transfer mating pair stabilization protein TraG | - |
| RG30_RS26075 () | 112459..112965 | + | 507 | WP_073534330.1 | conjugal transfer entry exclusion protein TraS | - |
| RG30_RS26080 () | 113020..113733 | + | 714 | WP_077899822.1 | complement resistance protein TraT | - |
| RG30_RS26085 () | 113936..114676 | + | 741 | WP_073534332.1 | hypothetical protein | - |
| RG30_RS26090 () | 114727..116952 | + | 2226 | WP_073534333.1 | type IV conjugative transfer system coupling protein TraD | - |
| RG30_RS26095 () | 116961..117359 | - | 399 | WP_059257082.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| RG30_RS26100 () | 117359..117586 | - | 228 | WP_000450526.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| RG30_RS26105 () | 117668..122938 | + | 5271 | WP_077899824.1 | Multifunctional conjugation protein TraI | Relaxase |
| RG30_RS26110 () | 122958..123698 | + | 741 | WP_073534335.1 | conjugal transfer pilus acetylase TraX | - |
| RG30_RS26115 () | 123753..124313 | + | 561 | WP_059257079.1 | fertility inhibition protein FinO | - |
| RG30_RS26120 () | 124444..124656 | + | 213 | WP_073534336.1 | hypothetical protein | - |
| RG30_RS26125 () | 124902..125363 | + | 462 | WP_073534337.1 | thermonuclease family protein | - |
| RG30_RS26130 () | 125409..125618 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| RG30_RS26135 () | 125657..126247 | + | 591 | WP_073534338.1 | DUF2726 domain-containing protein | - |
| RG30_RS26145 () | 126402..126866 | + | 465 | WP_073534339.1 | hypothetical protein | - |
| - () | 127018..127079 | - | 62 | NuclAT_1 | - | - |
| - () | 127018..127079 | - | 62 | NuclAT_1 | - | - |
| - () | 127018..127079 | - | 62 | NuclAT_1 | - | - |
| - () | 127018..127079 | - | 62 | NuclAT_1 | - | - |
| RG30_RS26155 () | 127066..127272 | + | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | - |
| RG30_RS26160 () | 127556..127813 | + | 258 | WP_073534340.1 | replication regulatory protein RepA | - |
| RG30_RS26170 () | 128035..128109 | + | 75 | WP_032144212.1 | RepA leader peptide Tap | - |
| RG30_RS26175 () | 128102..128959 | + | 858 | WP_073534341.1 | incFII family plasmid replication initiator RepA | - |
| RG30_RS27765 () | 129661..129822 | + | 162 | WP_073534342.1 | hypothetical protein | - |
| RG30_RS26190 () | 129876..130160 | + | 285 | WP_073534343.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| RG30_RS26195 () | 130148..130636 | + | 489 | WP_062859951.1 | GNAT family N-acetyltransferase | Toxin Detail |
| RG30_RS27770 () | 131013..131288 | - | 276 | WP_157925946.1 | hypothetical protein | - |
| RG30_RS26210 () | 131682..132317 | + | 636 | WP_073534345.1 | proQ/FINO family protein | - |
| RG30_RS26225 () | 133276..134136 | - | 861 | WP_073534348.1 | putative protein YcjY | VF |
| RG30_RS26230 () | 135303..136226 | - | 924 | WP_073534349.1 | DMT family transporter | - |
| RG30_RS26235 () | 136501..137319 | - | 819 | WP_149026025.1 | Tyrosine recombinase XerD | VF |
| RG30_RS26240 () | 137508..138083 | + | 576 | WP_000813673.1 | Tyrosine recombinase XerD | VF |
| RG30_RS26245 () | 138567..139163 | + | 597 | WP_073534350.1 | Type-1 fimbrial protein, A chain | VF |
| RG30_RS26250 () | 139239..139943 | + | 705 | WP_073534351.1 | molecular chaperone | - |
| RG30_RS26255 () | 139924..140367 | + | 444 | WP_000665199.1 | molecular chaperone | - |
| RG30_RS26260 () | 140396..142903 | + | 2508 | WP_001239411.1 | Outer membrane usher protein SfmD | VF |
| RG30_RS26265 () | 142894..143580 | + | 687 | WP_073534295.1 | molecular chaperone | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|