MGE detailed information
MGE type: Conjugative plasmid MGE length: 103644 bp
Accession: NZ_CP006641 Location: 1..103644 Organism: Escherichia coli PCN061 Replicon: plasmid PCN061p5
Accession: NZ_CP006641 Location: 1..103644 Organism: Escherichia coli PCN061 Replicon: plasmid PCN061p5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCN061_RS23480 () | 46..1077 | + | 1032 | WP_000907870.1 | replication initiation protein | - |
| PCN061_RS29340 () | 1773..1985 | + | 213 | WP_021265676.1 | hypothetical protein | - |
| PCN061_RS23490 () | 2100..3308 | - | 1209 | WP_000198533.1 | IS91 family transposase ISSbo1 | Transposase |
| PCN061_RS23495 () | 3289..3561 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| PCN061_RS23500 () | 3644..5026 | - | 1383 | Protein_4 | IS91 family transposase ISVsa3 | Transposase |
| PCN061_RS23505 () | 5138..5443 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| PCN061_RS23510 () | 5471..6685 | - | 1215 | WP_000214121.1 | Bicyclomycin resistance protein | ARG |
| PCN061_RS29500 () | 6902..7348 | - | 447 | Protein_7 | DUF3363 domain-containing protein | - |
| PCN061_RS23520 () | 7817..8962 | - | 1146 | Protein_8 | IS91 family transposase ISVsa3 | Transposase |
| PCN061_RS23525 () | 9320..9589 | + | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| PCN061_RS23530 () | 9586..9867 | + | 282 | WP_000970007.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PCN061_RS23535 () | 9907..10755 | + | 849 | WP_021265674.1 | 3'-5' exonuclease | - |
| PCN061_RS23540 () | 10872..11345 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| PCN061_RS29505 () | 11822..12088 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| PCN061_RS23550 () | 12088..12582 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| PCN061_RS23555 () | 12638..13240 | - | 603 | WP_000517695.1 | hypothetical protein | - |
| PCN061_RS23560 () | 13594..14940 | + | 1347 | WP_001132032.1 | hypothetical protein | - |
| PCN061_RS23565 () | 15219..17099 | + | 1881 | WP_001283341.1 | colicin 1B | - |
| PCN061_RS23570 () | 17117..17464 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| PCN061_RS23575 () | 17583..17931 | + | 349 | Protein_19 | hypothetical protein | - |
| PCN061_RS23580 () | 17951..18541 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| PCN061_RS23585 () | 18541..18798 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| PCN061_RS23590 () | 19149..20150 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| PCN061_RS23595 () | 20326..20670 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| PCN061_RS23600 () | 21169..21423 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| PCN061_RS23605 () | 21468..22394 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| PCN061_RS23610 () | 22926..23339 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| PCN061_RS23615 () | 23341..24120 | + | 780 | WP_021265673.1 | site-specific integrase | - |
| PCN061_RS23620 () | 24300..24944 | + | 645 | WP_001144036.1 | ParA family protein | - |
| PCN061_RS23625 () | 25031..25339 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| PCN061_RS23630 () | 25753..26733 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| PCN061_RS23635 () | 26726..27142 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| PCN061_RS23640 () | 27144..28418 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| PCN061_RS23645 () | 28418..28855 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PCN061_RS23650 () | 28852..29100 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PCN061_RS23655 () | 29164..30384 | - | 1221 | WP_000343760.1 | ISL3 family transposase ISKox3 | Transposase |
| PCN061_RS23660 () | 30842..31744 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| PCN061_RS28155 () | 31741..32052 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| PCN061_RS23670 () | 32129..32812 | + | 684 | WP_000086178.1 | DNA methylase | - |
| PCN061_RS23675 () | 32813..33034 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| PCN061_RS23680 () | 33046..33480 | + | 435 | WP_000274403.1 | DUF1380 family protein | - |
| PCN061_RS29105 () | 33531..34301 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| PCN061_RS23695 () | 34842..35144 | + | 303 | WP_072132163.1 | antirestriction protein | - |
| PCN061_RS23700 () | 35191..35613 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| PCN061_RS23705 () | 35610..35801 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| PCN061_RS29510 () | 36134..36202 | - | 69 | Protein_45 | pilus protein | - |
| PCN061_RS23715 () | 36571..37098 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| PCN061_RS23720 () | 37156..37389 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| PCN061_RS23725 () | 37448..39406 | + | 1959 | WP_021265661.1 | ParB/RepB/Spo0J family partition protein | - |
| PCN061_RS23730 () | 39461..39895 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| PCN061_RS23735 () | 39892..40611 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| PCN061_RS23740 () | 40608..41204 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| PCN061_RS23750 () | 41667..42167 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| PCN061_RS23755 () | 42896..43330 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| PCN061_RS23760 () | 43422..43688 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| PCN061_RS23765 () | 43753..44694 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| PCN061_RS29515 () | 44756..44926 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| PCN061_RS23775 () | 44957..45208 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| PCN061_RS29520 () | 45242..45439 | - | 198 | WP_001412266.1 | hypothetical protein | - |
| PCN061_RS23780 () | 45788..46636 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| PCN061_RS23785 () | 46721..47056 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| PCN061_RS23790 () | 47290..47622 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PCN061_RS23795 () | 47633..50332 | + | 2700 | WP_024143648.1 | Protein TraI | Relaxase |
| PCN061_RS23800 () | 50370..52661 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| PCN061_RS23805 () | 52654..53724 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| PCN061_RS23810 () | 53743..54951 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 55131..55188 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 55131..55188 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 55131..55188 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 55131..55188 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| PCN061_RS23815 () | 55243..55395 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| PCN061_RS23820 () | 55467..55718 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| PCN061_RS29525 () | 56377..56553 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| PCN061_RS23840 () | 56945..57154 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| PCN061_RS23845 () | 57226..57876 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PCN061_RS23850 () | 57950..60118 | - | 2169 | WP_021265679.1 | DotA/TraY family protein | - |
| PCN061_RS23855 () | 60215..60799 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| PCN061_RS23860 () | 60828..62030 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| PCN061_RS23865 () | 61997..62611 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| PCN061_RS23870 () | 62611..65624 | - | 3014 | Protein_75 | IncI1-type conjugal transfer protein TraU | - |
| PCN061_RS23875 () | 65631..67244 | - | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| PCN061_RS23880 () | 67275..67625 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| PCN061_RS23885 () | 67622..68047 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| PCN061_RS23890 () | 68284..69084 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| PCN061_RS23895 () | 69068..69256 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| PCN061_RS23900 () | 69320..69724 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| PCN061_RS23905 () | 69775..70302 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PCN061_RS23910 () | 70302..71006 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| PCN061_RS23915 () | 71006..72295 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| PCN061_RS23920 () | 72298..73281 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| PCN061_RS23925 () | 73292..73984 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| PCN061_RS23930 () | 73981..74328 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PCN061_RS23935 () | 74346..78113 | - | 3768 | WP_001141527.1 | DNA primase | - |
| PCN061_RS23940 () | 78202..78753 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| PCN061_RS27170 () | 78768..79058 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| PCN061_RS23945 () | 79055..80203 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| PCN061_RS23950 () | 80200..81018 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| PCN061_RS23955 () | 81015..81473 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PCN061_RS23960 () | 81868..82452 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PCN061_RS23965 () | 82512..83714 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| PCN061_RS23970 () | 83799..84623 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| PCN061_RS23975 () | 84774..85928 | - | 1155 | WP_001139957.1 | integrase | - |
| PCN061_RS28700 () | 87120..87368 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| PCN061_RS23990 () | 87365..88657 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| PCN061_RS23995 () | 88657..89313 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PCN061_RS24000 () | 89298..89858 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PCN061_RS24005 () | 89868..90482 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| PCN061_RS24010 () | 90500..91597 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| PCN061_RS24015 () | 91610..93163 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| PCN061_RS24020 () | 93174..93626 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| PCN061_RS24025 () | 93613..94908 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| PCN061_RS24030 () | 94901..96583 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| PCN061_RS24035 () | 96597..97034 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PCN061_RS24040 () | 97034..98101 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| PCN061_RS24045 () | 98725..99021 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| PCN061_RS24050 () | 99197..99451 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| PCN061_RS24055 () | 99613..100164 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| PCN061_RS24060 () | 100337..101020 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| PCN061_RS24065 () | 101274..101807 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| PCN061_RS24070 () | 102249..102536 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| PCN061_RS24075 () | 102454..102717 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli | Conjugative plasmid | TA6370, TA30448 | NC_023329 | 1..104399 | 0.005 |