MGE detailed information
MGE type: Conjugative plasmid MGE length: 148919 bp
Accession: NZ_AP027057 Location: 1..148919 Organism: Limnohabitans sp. TEGF004 Replicon: plasmid pTEGF4
Accession: NZ_AP027057 Location: 1..148919 Organism: Limnohabitans sp. TEGF004 Replicon: plasmid pTEGF4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LINBF2_RS12875 | 371..1132 | + | 762 | WP_281891423.1 | tyrosine-type recombinase/integrase | - |
| LINBF2_RS12880 (LTEGF4_25460) | 1975..2982 | - | 1008 | WP_281891424.1 | ParB/RepB/Spo0J family partition protein | - |
| LINBF2_RS12885 (LTEGF4_25470) | 2994..4193 | - | 1200 | WP_281891425.1 | AAA family ATPase | - |
| LINBF2_RS12890 (LTEGF4_25480) | 4829..6226 | + | 1398 | WP_281891426.1 | replication initiation protein | - |
| LINBF2_RS12895 (LTEGF4_25490) | 6338..6691 | + | 354 | WP_281891427.1 | RidA family protein | - |
| LINBF2_RS12900 (LTEGF4_25500) | 6911..7207 | + | 297 | WP_281891428.1 | HipA domain-containing protein | - |
| LINBF2_RS12905 (LTEGF4_25510) | 7519..7986 | - | 468 | Protein_7 | hypothetical protein | - |
| LINBF2_RS12910 (LTEGF4_25520) | 7990..8367 | + | 378 | WP_281891352.1 | IS5 family transposase ISHph1 | Transposase |
| LINBF2_RS12915 (LTEGF4_25540) | 8422..9187 | - | 766 | Protein_9 | DUF4158 domain-containing protein | - |
| LINBF2_RS12920 | 9273..9734 | - | 462 | Protein_10 | recombinase family protein | - |
| LINBF2_RS12925 (LTEGF4_25560) | 9913..10203 | + | 291 | WP_281891353.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| LINBF2_RS12930 (LTEGF4_25570) | 10191..10481 | + | 291 | WP_281891354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LINBF2_RS12935 (LTEGF4_25580) | 10487..11022 | + | 536 | Protein_13 | transposase | - |
| LINBF2_RS12940 (LTEGF4_25590) | 12167..12559 | + | 393 | WP_281891429.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LINBF2_RS12945 (LTEGF4_25600) | 12564..12911 | + | 348 | WP_281891482.1 | XRE family transcriptional regulator | - |
| LINBF2_RS12950 (LTEGF4_25610) | 13346..13579 | + | 234 | WP_281891430.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LINBF2_RS12955 (LTEGF4_25620) | 13579..13989 | + | 411 | WP_281891431.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LINBF2_RS12960 (LTEGF4_25630) | 14427..14846 | - | 420 | WP_281891432.1 | hypothetical protein | - |
| LINBF2_RS12965 (LTEGF4_25640) | 14836..16041 | - | 1206 | WP_281891433.1 | hypothetical protein | - |
| LINBF2_RS12970 | 16441..16700 | - | 260 | Protein_20 | tyrosine-type recombinase/integrase | - |
| LINBF2_RS12975 | 16780..16929 | + | 150 | Protein_21 | helix-turn-helix domain-containing protein | - |
| LINBF2_RS12980 (LTEGF4_25650) | 17232..17450 | + | 219 | WP_281891434.1 | hypothetical protein | - |
| LINBF2_RS12985 (LTEGF4_25660) | 17458..17730 | + | 273 | WP_281891435.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LINBF2_RS12990 (LTEGF4_25670) | 18382..18972 | - | 591 | WP_281891436.1 | response regulator transcription factor | - |
| LINBF2_RS12995 | 19062..19958 | - | 897 | WP_281891437.1 | DMT family transporter | - |
| LINBF2_RS13000 (LTEGF4_25700) | 20031..20426 | - | 396 | WP_281891438.1 | RidA family protein | - |
| LINBF2_RS13005 | 20437..22095 | - | 1659 | WP_281891439.1 | AMP-binding protein | - |
| LINBF2_RS13010 (LTEGF4_25730) | 22102..23298 | - | 1197 | WP_281891440.1 | acyl-CoA dehydrogenase family protein | - |
| LINBF2_RS13015 (LTEGF4_25740) | 23301..24155 | - | 855 | WP_281891441.1 | enoyl-CoA hydratase family protein | - |
| LINBF2_RS13020 (LTEGF4_25750) | 24183..24980 | - | 798 | WP_281891442.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| LINBF2_RS13025 (LTEGF4_25760) | 24977..27304 | - | 2328 | WP_281891443.1 | bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase | - |
| LINBF2_RS13030 (LTEGF4_25770) | 27586..28746 | + | 1161 | WP_281891444.1 | DcaP family trimeric outer membrane transporter | - |
| LINBF2_RS13035 (LTEGF4_25780) | 29254..29796 | - | 543 | WP_146180645.1 | hypothetical protein | - |
| LINBF2_RS13040 (LTEGF4_25790) | 29802..30557 | - | 756 | WP_281891445.1 | hypothetical protein | - |
| LINBF2_RS13045 | 30571..32901 | - | 2331 | WP_281891446.1 | hypothetical protein | - |
| LINBF2_RS13050 (LTEGF4_25820) | 33767..35176 | - | 1410 | WP_281891447.1 | amino acid permease | - |
| LINBF2_RS13055 | 35411..36685 | + | 1275 | WP_281891448.1 | D-amino acid dehydrogenase | - |
| LINBF2_RS13060 (LTEGF4_25840) | 36705..37766 | + | 1062 | WP_281891449.1 | alanine racemase | - |
| LINBF2_RS13065 | 37971..38084 | - | 114 | Protein_39 | VapC toxin family PIN domain ribonuclease | - |
| LINBF2_RS13070 (LTEGF4_25860) | 38298..38807 | - | 510 | WP_281891450.1 | hypothetical protein | - |
| LINBF2_RS13075 (LTEGF4_25870) | 38976..41045 | + | 2070 | WP_281891451.1 | hypothetical protein | - |
| LINBF2_RS13080 | 41331..42797 | + | 1467 | WP_281891452.1 | xanthine dehydrogenase small subunit | - |
| LINBF2_RS13085 (LTEGF4_25890) | 42794..45094 | + | 2301 | WP_281891453.1 | xanthine dehydrogenase molybdopterin binding subunit | - |
| LINBF2_RS13090 | 45098..46447 | + | 1350 | WP_281891454.1 | guanine deaminase | - |
| LINBF2_RS13095 | 46591..46725 | - | 135 | Protein_45 | integrase core domain-containing protein | - |
| LINBF2_RS13100 (LTEGF4_25900) | 47137..50184 | + | 3048 | WP_281891455.1 | type II CRISPR RNA-guided endonuclease Cas9 | - |
| LINBF2_RS13105 (LTEGF4_25910) | 50187..51113 | + | 927 | WP_281891456.1 | type II CRISPR-associated endonuclease Cas1 | - |
| LINBF2_RS13110 (LTEGF4_25920) | 51122..51448 | + | 327 | WP_281891457.1 | CRISPR-associated endonuclease Cas2 | - |
| LINBF2_RS13115 (LTEGF4_25930) | 53518..53844 | - | 327 | WP_281891458.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LINBF2_RS13120 (LTEGF4_25940) | 53831..54061 | - | 231 | WP_108403049.1 | addiction module antitoxin | - |
| LINBF2_RS13125 (LTEGF4_25950) | 54229..54870 | - | 642 | WP_281891459.1 | Chemotaxis response regulator protein-glutamate methylesterase | VF |
| LINBF2_RS13130 (LTEGF4_25960) | 55233..56258 | - | 1026 | WP_281891460.1 | hypothetical protein | - |
| LINBF2_RS13135 (LTEGF4_25970) | 56538..58382 | + | 1845 | WP_281891461.1 | ATP-binding protein | - |
| LINBF2_RS13140 (LTEGF4_25980) | 58390..58710 | - | 321 | WP_281891462.1 | hypothetical protein | - |
| LINBF2_RS13145 (LTEGF4_25990) | 58742..59119 | - | 378 | WP_281891463.1 | hypothetical protein | - |
| LINBF2_RS13150 (LTEGF4_26000) | 59120..59476 | - | 357 | WP_281891464.1 | hypothetical protein | - |
| LINBF2_RS13155 | 59592..61079 | + | 1488 | WP_281891465.1 | NADH:flavin oxidoreductase | - |
| LINBF2_RS13160 (LTEGF4_26030) | 61217..62512 | + | 1296 | WP_281891466.1 | NCS2 family permease | - |
| LINBF2_RS13165 | 62642..62914 | + | 273 | Protein_59 | HipA domain-containing protein | - |
| LINBF2_RS13170 | 62912..63007 | - | 96 | Protein_60 | IS3 family transposase ISEc14 | Transposase |
| LINBF2_RS13175 (LTEGF4_26040) | 63397..64764 | + | 1368 | WP_281891467.1 | tryptophanase | - |
| LINBF2_RS13180 (LTEGF4_26050) | 64944..65342 | + | 399 | WP_281891468.1 | helix-turn-helix transcriptional regulator | - |
| LINBF2_RS13185 | 65588..66883 | + | 1296 | WP_281891469.1 | hypothetical protein | - |
| LINBF2_RS13190 (LTEGF4_26080) | 66978..67418 | - | 441 | WP_281891470.1 | acyl-CoA thioesterase | - |
| LINBF2_RS13195 (LTEGF4_26090) | 67427..68632 | - | 1206 | WP_281891471.1 | 3-oxoadipyl-CoA thiolase | - |
| LINBF2_RS13200 (LTEGF4_26100) | 68629..70677 | - | 2049 | WP_281891472.1 | 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | - |
| LINBF2_RS13205 (LTEGF4_26110) | 70681..71895 | - | 1215 | WP_281891473.1 | acyl-CoA dehydrogenase | - |
| LINBF2_RS13210 (LTEGF4_26120) | 71993..72619 | + | 627 | WP_281891474.1 | arylformamidase | - |
| LINBF2_RS13215 (LTEGF4_26130) | 72669..73922 | + | 1254 | WP_281891475.1 | kynureninase | - |
| LINBF2_RS13220 (LTEGF4_26140) | 73961..74809 | + | 849 | WP_281891476.1 | tryptophan 2,3-dioxygenase | - |
| LINBF2_RS13225 (LTEGF4_26150) | 74937..75338 | + | 402 | WP_281891348.1 | hypothetical protein | - |
| LINBF2_RS13230 (LTEGF4_26160) | 75489..75890 | + | 402 | WP_281891349.1 | hypothetical protein | - |
| LINBF2_RS13235 (LTEGF4_26170) | 76370..76915 | - | 546 | WP_281891350.1 | porin family protein | - |
| LINBF2_RS13240 (LTEGF4_26180) | 77288..77503 | + | 216 | WP_281891351.1 | hypothetical protein | - |
| LINBF2_RS13245 | 78334..78801 | - | 468 | Protein_75 | hypothetical protein | - |
| LINBF2_RS13250 (LTEGF4_26190) | 78805..79182 | + | 378 | WP_281891352.1 | IS5 family transposase ISHph1 | Transposase |
| LINBF2_RS13255 (LTEGF4_26210) | 79237..80002 | - | 766 | Protein_77 | DUF4158 domain-containing protein | - |
| LINBF2_RS13260 | 80088..80549 | - | 462 | Protein_78 | recombinase family protein | - |
| LINBF2_RS13265 (LTEGF4_26230) | 80728..81018 | + | 291 | WP_281891353.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| LINBF2_RS13270 (LTEGF4_26240) | 81006..81296 | + | 291 | WP_281891354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LINBF2_RS13275 (LTEGF4_26250) | 81302..81837 | + | 536 | Protein_81 | transposase | - |
| LINBF2_RS13280 (LTEGF4_26260) | 82119..82639 | - | 521 | Protein_82 | winged helix DNA-binding protein | - |
| LINBF2_RS13285 (LTEGF4_26270) | 82816..84378 | - | 1563 | WP_281891355.1 | DUF5666 domain-containing protein | - |
| LINBF2_RS13290 (LTEGF4_26280) | 85311..86630 | + | 1320 | WP_281891477.1 | homoserine dehydrogenase | - |
| LINBF2_RS13295 (LTEGF4_26300) | 87476..88594 | + | 1119 | WP_281891356.1 | ATP-binding protein | - |
| LINBF2_RS13300 (LTEGF4_26310) | 88613..89011 | + | 399 | WP_281891357.1 | H-NS histone family protein | - |
| LINBF2_RS13305 (LTEGF4_26320) | 89126..89383 | + | 258 | WP_281891358.1 | antitoxin | Antitoxin Detail |
| LINBF2_RS13310 (LTEGF4_26330) | 89380..89706 | + | 327 | WP_281891359.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LINBF2_RS13315 (LTEGF4_26340) | 89823..90131 | + | 309 | WP_281891360.1 | putative addiction module antidote protein | - |
| LINBF2_RS13320 (LTEGF4_26350) | 90300..90608 | + | 309 | WP_281891478.1 | HigA family addiction module antitoxin | - |
| LINBF2_RS13325 (LTEGF4_26370) | 91295..91657 | + | 363 | WP_281891361.1 | hypothetical protein | - |
| LINBF2_RS13330 (LTEGF4_26380) | 91675..91995 | + | 321 | WP_281891362.1 | hypothetical protein | VF |
| LINBF2_RS13335 | 92008..92328 | + | 321 | WP_281891363.1 | Type IV secretion system protein virB3 | VF |
| LINBF2_RS13340 (LTEGF4_26390) | 92331..94769 | + | 2439 | WP_281891364.1 | Type IV secretion system protein virB4 | VF |
| LINBF2_RS13345 (LTEGF4_26400) | 94766..95863 | + | 1098 | WP_281891365.1 | type IV secretion system protein | - |
| LINBF2_RS13350 (LTEGF4_26410) | 95866..96459 | + | 594 | WP_281891366.1 | type IV secretion system protein | - |
| LINBF2_RS13355 (LTEGF4_26420) | 96503..97183 | + | 681 | WP_281891367.1 | Type IV secretion system protein virB8 | VF |
| LINBF2_RS13360 (LTEGF4_26430) | 97180..98085 | + | 906 | WP_281891368.1 | Type IV secretion system protein virB9 | VF |
| LINBF2_RS13365 (LTEGF4_26440) | 98082..99455 | + | 1374 | WP_281891369.1 | Type IV secretion system protein virB10 | VF |
| LINBF2_RS13370 (LTEGF4_26450) | 99424..100548 | + | 1125 | WP_281891370.1 | hypothetical protein | VF |
| LINBF2_RS13375 (LTEGF4_26460) | 100541..102502 | + | 1962 | WP_281891371.1 | hypothetical protein | VF |
| LINBF2_RS13380 (LTEGF4_26470) | 102489..102674 | + | 186 | WP_281891372.1 | hypothetical protein | - |
| LINBF2_RS13385 (LTEGF4_26480) | 102677..106063 | + | 3387 | WP_281891373.1 | zincin-like metallopeptidase domain-containing protein | - |
| LINBF2_RS13390 (LTEGF4_26490) | 106072..106479 | + | 408 | WP_281891374.1 | TcpQ domain-containing protein | - |
| LINBF2_RS13395 (LTEGF4_26500) | 106487..107044 | + | 558 | WP_281891375.1 | hypothetical protein | - |
| LINBF2_RS13400 (LTEGF4_26510) | 107058..108599 | + | 1542 | WP_281891376.1 | hypothetical protein | - |
| LINBF2_RS13405 (LTEGF4_26520) | 108599..110029 | + | 1431 | WP_281891377.1 | hypothetical protein | - |
| LINBF2_RS13410 (LTEGF4_26530) | 109974..110504 | + | 531 | WP_281891378.1 | hypothetical protein | - |
| LINBF2_RS13415 (LTEGF4_26540) | 110504..112513 | + | 2010 | WP_281891379.1 | Type II secretion system protein E | VF |
| LINBF2_RS13420 (LTEGF4_26550) | 112516..113721 | + | 1206 | WP_281891380.1 | type II secretion system F family protein | - |
| LINBF2_RS13425 (LTEGF4_26560) | 113756..114436 | + | 681 | WP_281891381.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LINBF2_RS13430 | 114457..115368 | + | 912 | WP_281891382.1 | hypothetical protein | - |
| LINBF2_RS13435 (LTEGF4_26570) | 115386..116477 | + | 1092 | WP_281891383.1 | putative protein YggR | VF |
| LINBF2_RS13440 (LTEGF4_26580) | 116474..117478 | + | 1005 | WP_281891384.1 | type II secretion system protein | - |
| LINBF2_RS13445 (LTEGF4_26590) | 117499..118383 | + | 885 | WP_281891385.1 | hypothetical protein | - |
| LINBF2_RS13450 (LTEGF4_26600) | 118416..119933 | + | 1518 | WP_281891386.1 | hypothetical protein | - |
| LINBF2_RS13455 (LTEGF4_26610) | 119943..121595 | + | 1653 | WP_281891387.1 | hypothetical protein | - |
| LINBF2_RS13460 (LTEGF4_26620) | 121628..122239 | - | 612 | WP_281891388.1 | hypothetical protein | - |
| LINBF2_RS13465 (LTEGF4_26630) | 122328..122591 | - | 264 | WP_281891389.1 | hypothetical protein | - |
| LINBF2_RS13470 (LTEGF4_26640) | 123012..124223 | - | 1212 | WP_281891390.1 | DUF1173 domain-containing protein | - |
| LINBF2_RS13475 | 124236..124547 | - | 312 | WP_281891391.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LINBF2_RS13480 (LTEGF4_26650) | 124564..125001 | - | 438 | WP_281891392.1 | hypothetical protein | - |
| LINBF2_RS13485 (LTEGF4_26660) | 124998..125708 | - | 711 | WP_281891393.1 | StbB family protein | - |
| LINBF2_RS13490 (LTEGF4_26670) | 125721..126080 | - | 360 | WP_281891395.1 | hypothetical protein | - |
| LINBF2_RS13495 (LTEGF4_26680) | 126070..126291 | - | 222 | WP_281891396.1 | hypothetical protein | - |
| LINBF2_RS13500 (LTEGF4_26690) | 126288..126719 | - | 432 | WP_281891479.1 | Type IV secretion system protein virB1 | VF |
| LINBF2_RS13505 (LTEGF4_26700) | 126755..127678 | - | 924 | WP_281891480.1 | hypothetical protein | Relaxase |
| LINBF2_RS13510 (LTEGF4_26710) | 127802..128545 | - | 744 | WP_281891397.1 | hypothetical protein | - |
| LINBF2_RS13515 (LTEGF4_26720) | 128550..129332 | - | 783 | WP_281891398.1 | DNA/RNA non-specific endonuclease | - |
| LINBF2_RS13520 (LTEGF4_26730) | 129904..130746 | - | 843 | WP_281891399.1 | N-6 DNA methylase | - |
| LINBF2_RS13525 (LTEGF4_26740) | 130784..131083 | - | 300 | WP_281891400.1 | hypothetical protein | - |
| LINBF2_RS13530 (LTEGF4_26750) | 131874..132158 | + | 285 | WP_281891401.1 | hypothetical protein | - |
| LINBF2_RS13535 (LTEGF4_26760) | 132187..133254 | - | 1068 | WP_281891402.1 | hypothetical protein | - |
| LINBF2_RS13540 (LTEGF4_26770) | 133247..134560 | - | 1314 | WP_281891403.1 | hypothetical protein | - |
| LINBF2_RS13545 (LTEGF4_26780) | 135094..135306 | - | 213 | WP_281891404.1 | helix-turn-helix transcriptional regulator | - |
| LINBF2_RS13550 (LTEGF4_26790) | 135309..135824 | - | 516 | WP_281891405.1 | helix-turn-helix transcriptional regulator | - |
| LINBF2_RS13555 (LTEGF4_26800) | 135821..136633 | - | 813 | WP_281891406.1 | hypothetical protein | - |
| LINBF2_RS13560 (LTEGF4_26810) | 136644..136898 | - | 255 | WP_281891407.1 | hypothetical protein | - |
| LINBF2_RS13565 (LTEGF4_26820) | 136895..137185 | - | 291 | WP_281891408.1 | hypothetical protein | - |
| LINBF2_RS13570 (LTEGF4_26830) | 137190..137678 | - | 489 | WP_281891409.1 | hypothetical protein | - |
| LINBF2_RS13575 (LTEGF4_26840) | 137853..138254 | - | 402 | WP_281891410.1 | hypothetical protein | - |
| LINBF2_RS13580 (LTEGF4_26850) | 138393..138698 | - | 306 | WP_281891411.1 | hypothetical protein | - |
| LINBF2_RS13585 (LTEGF4_26860) | 138728..139558 | - | 831 | WP_281891412.1 | Fic family protein | - |
| LINBF2_RS13590 (LTEGF4_26870) | 139582..139797 | - | 216 | WP_281891413.1 | antitoxin VbhA family protein | - |
| LINBF2_RS13595 (LTEGF4_26880) | 140013..140471 | + | 459 | WP_281891414.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LINBF2_RS13600 (LTEGF4_26890) | 140822..142261 | - | 1440 | WP_281891415.1 | hypothetical protein | - |
| LINBF2_RS13605 (LTEGF4_26900) | 142381..143550 | - | 1170 | Protein_147 | type I restriction endonuclease | - |
| LINBF2_RS13610 (LTEGF4_26910) | 143710..143997 | + | 288 | WP_281891416.1 | type II toxin-antitoxin system HigB family toxin | - |
| LINBF2_RS13615 (LTEGF4_26920) | 144033..145250 | + | 1218 | WP_281891417.1 | transcriptional regulator | - |
| LINBF2_RS13620 (LTEGF4_26930) | 145664..146008 | - | 345 | Protein_150 | type I restriction-modification system subunit M N-terminal domain-containing protein | - |
| LINBF2_RS13625 (LTEGF4_26950) | 146264..146893 | - | 630 | WP_281891481.1 | IS3 family transposase ISAav4 | Transposase |
| LINBF2_RS13630 (LTEGF4_26960) | 146911..147231 | - | 321 | WP_281891418.1 | IS3 family transposase ISAav4 | Transposase |
| LINBF2_RS13635 (LTEGF4_26970) | 147268..147396 | - | 129 | WP_281891419.1 | hypothetical protein | - |
| LINBF2_RS13640 (LTEGF4_26980) | 147407..147802 | - | 396 | WP_281891420.1 | type II toxin-antitoxin system VapC family toxin | - |
| LINBF2_RS13645 (LTEGF4_26990) | 147799..148041 | - | 243 | WP_281891421.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|