MGE detailed information
MGE type: Conjugative plasmid MGE length: 89986 bp
Accession: NC_021871 Location: 1..89986 Organism: Salmonella bongori N268-08 Replicon: plasmid RM1
Accession: NC_021871 Location: 1..89986 Organism: Salmonella bongori N268-08 Replicon: plasmid RM1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A464_RS22525 () | 126..558 | - | 433 | Protein_0 | IS3 family transposase IS1351 | Transposase |
| A464_RS25320 () | 1694..2482 | - | 789 | Protein_1 | incFII family plasmid replication initiator RepA | - |
| A464_RS25325 () | 2521..2592 | - | 72 | WP_071826035.1 | RepA leader peptide Tap | - |
| A464_RS22540 () | 2840..3106 | - | 267 | WP_077909639.1 | replication regulatory protein RepA | - |
| A464_RS22545 () | 3270..3464 | - | 195 | WP_024143498.1 | hypothetical protein | - |
| A464_RS25330 () | 3633..4017 | - | 385 | Protein_5 | traX family protein | - |
| A464_RS25335 () | 4044..4363 | - | 320 | Protein_6 | conjugal transfer protein TraX | - |
| A464_RS22560 () | 4377..4923 | - | 547 | Protein_7 | DUF2726 domain-containing protein | - |
| A464_RS22565 () | 4942..10237 | - | 5296 | Protein_8 | Multifunctional conjugation protein TraI | Relaxase |
| A464_RS22570 () | 10237..12486 | - | 2250 | WP_024143499.1 | type IV conjugative transfer system coupling protein TraD | - |
| A464_RS22575 () | 12637..13374 | - | 738 | WP_020842465.1 | complement resistance protein TraT | - |
| A464_RS22580 () | 13550..14110 | - | 561 | WP_020842466.1 | hypothetical protein | - |
| A464_RS22585 () | 14122..17019 | - | 2898 | WP_020842467.1 | conjugal transfer mating pair stabilization protein TraG | - |
| A464_RS22590 () | 17021..18382 | - | 1362 | WP_020842468.1 | F-type conjugal transfer protein TraH | - |
| A464_RS22595 () | 18382..18993 | - | 612 | WP_020842469.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| A464_RS22600 () | 19017..19796 | - | 780 | WP_020842470.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| A464_RS22605 () | 19793..21622 | - | 1830 | WP_020842471.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| A464_RS22610 () | 21619..22233 | - | 615 | WP_020842472.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| A464_RS22615 () | 22230..22598 | - | 369 | WP_020842473.1 | hypothetical protein | - |
| A464_RS22620 () | 22609..23610 | - | 1002 | WP_020842474.1 | conjugal transfer pilus assembly protein TraU | - |
| A464_RS22625 () | 23603..24241 | - | 639 | WP_020842475.1 | type-F conjugative transfer system protein TraW | - |
| A464_RS22630 () | 24241..24675 | - | 435 | WP_001525791.1 | type-F conjugative transfer system protein TrbI | - |
| A464_RS22635 () | 24672..27263 | - | 2592 | WP_020842476.1 | type IV secretion system protein TraC | - |
| A464_RS22640 () | 27274..27873 | - | 600 | WP_024143502.1 | type IV conjugative transfer system lipoprotein TraV | - |
| A464_RS22645 () | 27891..28364 | - | 474 | WP_042917484.1 | hypothetical protein | - |
| A464_RS22650 () | 28365..28679 | - | 315 | WP_138993527.1 | hypothetical protein | - |
| A464_RS22655 () | 28631..28975 | - | 345 | WP_020842481.1 | conjugative transfer protein | - |
| A464_RS22660 () | 28965..29162 | - | 198 | WP_077909642.1 | Clp protease | - |
| A464_RS22665 () | 29190..29414 | - | 225 | WP_020842483.1 | TraR/DksA C4-type zinc finger protein | - |
| A464_RS22670 () | 29524..30885 | - | 1362 | WP_020842484.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| A464_RS22675 () | 30872..31612 | - | 741 | WP_020842485.1 | type-F conjugative transfer system secretin TraK | - |
| A464_RS22680 () | 31602..32165 | - | 564 | WP_020842486.1 | type IV conjugative transfer system protein TraE | - |
| A464_RS22685 () | 32185..32490 | - | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| A464_RS22690 () | 32492..32851 | - | 360 | WP_020842487.1 | type IV conjugative transfer system pilin TraA | - |
| A464_RS25570 () | 32960..33127 | - | 168 | WP_154820138.1 | hypothetical protein | - |
| A464_RS22695 () | 33345..33626 | - | 282 | WP_020842489.1 | hypothetical protein | - |
| A464_RS22700 () | 34287..34673 | - | 387 | WP_020842490.1 | relaxosome protein TraM | - |
| A464_RS22705 () | 35142..35597 | + | 456 | WP_020842491.1 | hypothetical protein | VF |
| A464_RS22710 () | 35609..36139 | - | 531 | WP_020842492.1 | antirestriction protein | - |
| A464_RS22720 () | 36756..37589 | - | 834 | WP_024143505.1 | N-6 DNA methylase | - |
| A464_RS22725 () | 37639..37785 | - | 147 | WP_001159047.1 | hypothetical protein | - |
| A464_RS22730 () | 37880..38227 | - | 348 | WP_020842497.1 | hypothetical protein | - |
| A464_RS22735 () | 38278..38652 | - | 375 | WP_020842498.1 | hypothetical protein | - |
| A464_RS22740 () | 39275..39649 | - | 375 | Protein_43 | hypothetical protein | - |
| A464_RS22745 () | 39947..40300 | - | 354 | WP_024143506.1 | hypothetical protein | - |
| A464_RS22750 () | 40297..41025 | - | 729 | WP_020842501.1 | plasmid SOS inhibition protein A | - |
| A464_RS22755 () | 41022..41456 | - | 435 | WP_077909643.1 | conjugation system SOS inhibitor PsiB | - |
| A464_RS22760 () | 41497..43494 | - | 1998 | WP_020842503.1 | ParB/RepB/Spo0J family partition protein | - |
| A464_RS22765 () | 43564..43806 | - | 243 | WP_024143508.1 | DUF905 domain-containing protein | - |
| A464_RS22770 () | 43859..44413 | - | 555 | WP_020842505.1 | single-stranded DNA-binding protein | - |
| A464_RS22780 () | 45045..45362 | - | 318 | WP_020842508.1 | hypothetical protein | - |
| A464_RS22785 () | 45397..45651 | - | 255 | WP_024143509.1 | DNA polymerase III subunit theta | - |
| A464_RS25575 () | 45830..45988 | - | 159 | WP_042917487.1 | hypothetical protein | - |
| A464_RS22795 () | 46038..46544 | - | 507 | Protein_53 | antirestriction protein ArdA | - |
| A464_RS22800 () | 46981..47409 | - | 429 | WP_020842515.1 | antirestriction protein | - |
| A464_RS24880 () | 47595..47894 | - | 300 | Protein_55 | hypothetical protein | - |
| A464_RS22810 () | 47962..48358 | - | 397 | Protein_56 | DUF1380 family protein | - |
| A464_RS22815 () | 48412..48831 | - | 420 | WP_020842518.1 | DUF1380 domain-containing protein | - |
| A464_RS22820 () | 48842..49063 | - | 222 | WP_020842519.1 | hypothetical protein | - |
| A464_RS22825 () | 49063..49743 | - | 681 | WP_020842520.1 | DNA methylase | - |
| A464_RS22830 () | 50120..50455 | - | 336 | WP_020842521.1 | hypothetical protein | - |
| A464_RS24885 () | 50452..50919 | - | 468 | WP_020842522.1 | hypothetical protein | - |
| A464_RS22840 () | 51450..51872 | + | 423 | WP_020842523.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| A464_RS22845 () | 51872..52756 | + | 885 | WP_020842525.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| A464_RS22850 () | 52838..53812 | - | 975 | WP_020842526.1 | ParB/RepB/Spo0J family partition protein | - |
| A464_RS22855 () | 53812..55017 | - | 1206 | WP_000427674.1 | AAA family ATPase | - |
| A464_RS22860 () | 55444..56373 | + | 930 | WP_020842527.1 | Recombination-promoting nuclease RpnA | VF |
| A464_RS22865 () | 56676..57756 | - | 1081 | Protein_67 | LD-carboxypeptidase | - |
| A464_RS22870 () | 58315..59256 | + | 942 | WP_020842533.1 | Recombination-promoting nuclease RpnA | VF |
| A464_RS22875 () | 59407..60189 | - | 783 | WP_020842534.1 | site-specific integrase | - |
| A464_RS24895 () | 60227..60361 | - | 135 | Protein_70 | cytoplasmic protein | - |
| A464_RS22880 () | 60434..60739 | - | 306 | WP_020842535.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| A464_RS22885 () | 60741..60959 | - | 219 | WP_000813642.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| A464_RS22890 () | 61630..61860 | + | 231 | WP_020842536.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| A464_RS22895 () | 61857..62285 | + | 429 | WP_042917490.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| A464_RS25360 () | 62512..62757 | - | 246 | WP_138993537.1 | hypothetical protein | - |
| A464_RS22905 () | 63002..63781 | - | 780 | WP_020842541.1 | winged helix-turn-helix domain-containing protein | - |
| A464_RS22910 () | 64083..66677 | + | 2595 | WP_020842542.1 | AIDA-I autotransporter | VF |
| A464_RS22915 () | 66842..67378 | + | 537 | WP_020842543.1 | Vi polysaccharide biosynthesis protein tviA | - |
| A464_RS24505 () | 67436..67725 | - | 290 | Protein_79 | transposase | - |
| A464_RS25370 () | 67822..68097 | - | 276 | Protein_80 | IS3 family transposase ISLad1 | Transposase |
| A464_RS24515 () | 68093..68293 | + | 201 | Protein_81 | transposase | - |
| A464_RS22925 () | 68640..69170 | - | 531 | WP_020842550.1 | GNAT family N-acetyltransferase | Toxin Detail |
| A464_RS22930 () | 69174..69443 | - | 270 | WP_020842551.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| A464_RS22940 () | 70293..71282 | + | 990 | WP_077909641.1 | RepB family plasmid replication initiator protein | - |
| A464_RS22945 () | 71529..72314 | - | 786 | WP_049823145.1 | site-specific integrase | - |
| A464_RS25380 () | 72428..72553 | - | 126 | WP_138993539.1 | transcriptional regulator | - |
| A464_RS22950 () | 72662..72958 | - | 297 | WP_020842555.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A464_RS22955 () | 72945..73211 | - | 267 | WP_020842556.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| A464_RS22960 () | 73370..73713 | + | 344 | Protein_89 | IS3 family transposase ISKpn38 | Transposase |
| A464_RS22965 () | 74814..75458 | - | 645 | WP_020842560.1 | hypothetical protein | - |
| A464_RS22970 () | 75495..76091 | - | 597 | WP_020842561.1 | hypothetical protein | - |
| A464_RS22975 () | 76856..77302 | - | 447 | WP_020842563.1 | lysozyme | - |
| A464_RS22980 () | 77305..77619 | - | 315 | WP_020842564.1 | hypothetical protein | - |
| A464_RS22985 () | 77739..78089 | + | 351 | WP_020842565.1 | winged helix-turn-helix domain-containing protein | - |
| A464_RS22990 () | 78992..79855 | + | 864 | Protein_95 | replication protein RepA | - |
| A464_RS22995 () | 80143..80884 | - | 742 | Protein_96 | IS3 family transposase ISSty2 | Transposase |
| A464_RS23000 () | 81323..85135 | + | 3813 | WP_042917493.1 | Invasin | VF |
| A464_RS23005 () | 85138..86766 | + | 1629 | WP_020842570.1 | hypothetical protein | - |
| A464_RS25580 () | 86940..87101 | + | 162 | WP_020842571.1 | hypothetical protein | - |
| A464_RS23010 () | 87206..88669 | + | 1464 | WP_024143517.1 | hypothetical protein | - |
| A464_RS25385 () | 88696..89640 | + | 945 | WP_020842573.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|