MGE detailed information
MGE type: Genomic_island MGE length: 34308 bp
Accession: NC_018630 Location: 1035089..1069396 Organism: Streptococcus pneumoniae gamPNI0373 Replicon: chromosome
Accession: NC_018630 Location: 1035089..1069396 Organism: Streptococcus pneumoniae gamPNI0373 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF1038_RS05485 (HMPREF1038_01112) | 1030238..1032934 | - | 2697 | WP_000058196.1 | phosphoenolpyruvate carboxylase | - |
| HMPREF1038_RS05490 (HMPREF1038_01113) | 1032954..1034183 | - | 1230 | WP_000703361.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| HMPREF1038_RS11685 | 1034339..1034641 | - | 303 | Protein_1036 | transposase family protein | - |
| HMPREF1038_RS05500 (HMPREF1038_01115) | 1035089..1035310 | - | 222 | WP_000286245.1 | helix-turn-helix domain-containing protein | - |
| HMPREF1038_RS11695 (HMPREF1038_01116) | 1035990..1037201 | - | 1212 | Protein_1038 | MFS transporter | - |
| HMPREF1038_RS05515 (HMPREF1038_01118) | 1037203..1038447 | - | 1245 | WP_000548394.1 | hypothetical protein | - |
| HMPREF1038_RS05520 (HMPREF1038_01119) | 1038471..1039499 | - | 1029 | WP_000838665.1 | UDP-glucose 4-epimerase | VF |
| HMPREF1038_RS05525 (HMPREF1038_01120) | 1039501..1040172 | - | 672 | WP_000620361.1 | hypothetical protein | - |
| HMPREF1038_RS05530 (HMPREF1038_01121) | 1040175..1041269 | - | 1095 | WP_000490587.1 | hypothetical protein | - |
| HMPREF1038_RS05535 (HMPREF1038_01122) | 1041273..1041803 | - | 531 | WP_000586362.1 | hypothetical protein | - |
| HMPREF1038_RS05540 (HMPREF1038_01123) | 1041800..1042522 | - | 723 | WP_000634194.1 | nucleotidyltransferase | - |
| HMPREF1038_RS05545 (HMPREF1038_01124) | 1042509..1043378 | - | 870 | WP_000680920.1 | NAD(P)-dependent oxidoreductase | - |
| HMPREF1038_RS12445 | 1043482..1043553 | - | 72 | WP_001810617.1 | SHP2/SHP3 family peptide pheromone | - |
| HMPREF1038_RS12450 (HMPREF1038_01125) | 1043635..1044487 | + | 853 | Protein_1047 | Rgg/GadR/MutR family transcriptional regulator | - |
| HMPREF1038_RS11710 | 1044532..1046385 | - | 1854 | Protein_1048 | relaxase/mobilization nuclease domain-containing protein | - |
| HMPREF1038_RS05565 (HMPREF1038_01129) | 1046372..1046670 | - | 299 | Protein_1049 | MobC family plasmid mobilization relaxosome protein | - |
| HMPREF1038_RS05570 (HMPREF1038_01130) | 1046746..1047105 | - | 360 | WP_000003746.1 | hypothetical protein | - |
| HMPREF1038_RS05575 (HMPREF1038_01131) | 1047924..1049081 | - | 1158 | WP_001213953.1 | hypothetical protein | - |
| HMPREF1038_RS05580 (HMPREF1038_01132) | 1049109..1049870 | - | 762 | WP_000405367.1 | zeta toxin family protein | Toxin Detail |
| HMPREF1038_RS05585 (HMPREF1038_01133) | 1049870..1050346 | - | 477 | WP_000579612.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HMPREF1038_RS05590 (HMPREF1038_01134) | 1050791..1051246 | - | 456 | WP_000500471.1 | hypothetical protein | - |
| HMPREF1038_RS05600 (HMPREF1038_01135) | 1051521..1053258 | - | 1738 | Protein_1055 | alpha-glycosidase | - |
| HMPREF1038_RS05605 (HMPREF1038_01137) | 1053421..1054305 | - | 885 | WP_001844663.1 | diacylglycerol kinase family lipid kinase | - |
| HMPREF1038_RS05610 (HMPREF1038_01138) | 1054417..1055271 | - | 855 | WP_000900020.1 | ADP-ribosylglycohydrolase family protein | - |
| HMPREF1038_RS05615 (HMPREF1038_01139) | 1055329..1056087 | - | 759 | WP_000262024.1 | ATP-grasp domain-containing protein | - |
| HMPREF1038_RS05620 (HMPREF1038_01140) | 1056149..1056337 | - | 189 | WP_000179769.1 | hypothetical protein | - |
| HMPREF1038_RS05625 (HMPREF1038_01141) | 1056661..1057227 | - | 567 | WP_000234983.1 | hypothetical protein | - |
| HMPREF1038_RS11715 (HMPREF1038_01142) | 1057495..1059174 | - | 1680 | Protein_1061 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| HMPREF1038_RS05640 (HMPREF1038_01144) | 1059266..1059427 | - | 162 | WP_000368174.1 | hypothetical protein | - |
| HMPREF1038_RS05645 (HMPREF1038_01145) | 1060111..1060839 | - | 729 | WP_000224685.1 | phage replisome organizer N-terminal domain-containing protein | - |
| HMPREF1038_RS05650 (HMPREF1038_01146) | 1060966..1061417 | - | 452 | Protein_1064 | PcfB family protein | - |
| HMPREF1038_RS12790 (HMPREF1038_01147) | 1061603..1061776 | - | 174 | WP_001042635.1 | hypothetical protein | - |
| HMPREF1038_RS11720 (HMPREF1038_01148) | 1061850..1063490 | - | 1641 | Protein_1066 | MobA/MobL family protein | - |
| HMPREF1038_RS05670 (HMPREF1038_01150) | 1063800..1064117 | - | 318 | WP_000968321.1 | DUF3847 domain-containing protein | - |
| HMPREF1038_RS11725 | 1064173..1064598 | - | 426 | WP_075270856.1 | restriction endonuclease subunit S | - |
| HMPREF1038_RS05680 (HMPREF1038_01152) | 1064986..1065780 | - | 795 | WP_000677525.1 | Petrobactin import ATP-binding protein FpuD | VF |
| HMPREF1038_RS05685 (HMPREF1038_01153) | 1065780..1066787 | - | 1008 | WP_001180357.1 | putative siderophore transport system permease protein YfhA | VF |
| HMPREF1038_RS05690 (HMPREF1038_01154) | 1066787..1067794 | - | 1008 | WP_001244693.1 | Ferric enterobactin transport system permease protein FepD | VF |
| HMPREF1038_RS05695 (HMPREF1038_01155) | 1067784..1068809 | - | 1026 | WP_000790743.1 | iron-siderophore ABC transporter substrate-binding protein | - |
| HMPREF1038_RS05700 (HMPREF1038_01156) | 1069202..1069419 | - | 218 | Protein_1073 | helix-turn-helix transcriptional regulator | - |
| HMPREF1038_RS05705 (HMPREF1038_01157) | 1069710..1069943 | - | 234 | WP_000710799.1 | hypothetical protein | - |
| HMPREF1038_RS05710 (HMPREF1038_01158) | 1070157..1071788 | - | 1632 | WP_000914579.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| HMPREF1038_RS05715 (HMPREF1038_01159) | 1071862..1072836 | - | 975 | WP_001227738.1 | DUF1002 domain-containing protein | - |
| HMPREF1038_RS05720 (HMPREF1038_01160) | 1072910..1073524 | - | 615 | WP_000476375.1 | cell wall hydrolase Pmp23 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus pneumoniae P1031 | Genomic island | TA23658 | NC_012467 | 948920..980083 | 0.005 | |
| Streptococcus pneumoniae strain M23734 | Genomic island | TA108716 | NZ_CP031247 | 507165..538210 | 0.005 | |
| Streptococcus pneumoniae strain NCTC7465 | Genomic island | TA285643 | NZ_LN831051 | 1610627..1641675 | 0.004 |