MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 192103 bp
Accession: NC_015579 Location: 1..192103 Organism: Novosphingobium sp. PP1Y Replicon: plasmid Lpl
Accession: NC_015579 Location: 1..192103 Organism: Novosphingobium sp. PP1Y Replicon: plasmid Lpl
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP1Y_RS00270 () | 900..2999 | + | 2100 | WP_041557974.1 | ParB/RepB/Spo0J family partition protein | - |
| PP1Y_RS00275 () | 3101..4153 | + | 1053 | WP_013831269.1 | toprim domain-containing protein | - |
| PP1Y_RS00280 () | 4471..5394 | + | 924 | WP_013831270.1 | DUF2493 domain-containing protein | - |
| PP1Y_RS00285 () | 5886..6173 | - | 288 | WP_039286522.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| PP1Y_RS00290 () | 6185..6466 | - | 282 | WP_013831273.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PP1Y_RS00295 () | 6764..7705 | - | 942 | WP_013831274.1 | Abi family protein | - |
| PP1Y_RS00300 () | 8043..8270 | + | 228 | WP_013831275.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| PP1Y_RS00305 () | 8272..8661 | + | 390 | WP_013831276.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| PP1Y_RS00310 () | 8778..9515 | - | 738 | WP_013831277.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| PP1Y_RS26085 () | 10381..10545 | + | 165 | WP_013831279.1 | hypothetical protein | - |
| PP1Y_RS00315 () | 10686..11129 | + | 444 | WP_013831280.1 | hypothetical protein | - |
| PP1Y_RS00320 () | 11707..12033 | + | 327 | WP_041557982.1 | DUF736 domain-containing protein | - |
| PP1Y_RS00325 () | 12226..12435 | + | 210 | WP_041557984.1 | hypothetical protein | - |
| PP1Y_RS00330 () | 12485..13039 | + | 555 | WP_148274768.1 | DUF2285 domain-containing protein | - |
| PP1Y_RS00335 () | 13131..13388 | + | 258 | WP_041557986.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS00340 () | 13430..14275 | + | 846 | WP_083835143.1 | replication initiator protein A | - |
| PP1Y_RS00345 () | 14496..15017 | + | 522 | WP_013831286.1 | DUF2840 domain-containing protein | - |
| PP1Y_RS00350 () | 15014..15613 | + | 600 | WP_041557990.1 | conjugative transfer signal peptidase TraF | - |
| PP1Y_RS00355 () | 15604..15936 | + | 333 | WP_013831287.1 | DUF736 domain-containing protein | - |
| PP1Y_RS00360 () | 15962..16666 | + | 705 | WP_013831288.1 | lytic transglycosylase domain-containing protein | - |
| PP1Y_RS00365 () | 16899..18644 | + | 1746 | WP_013831289.1 | VirD2 family relaxase/mobilization nuclease | - |
| PP1Y_RS00370 () | 18673..20766 | + | 2094 | WP_013831290.1 | conjugal transfer protein TraG | - |
| PP1Y_RS00375 () | 20763..21176 | + | 414 | WP_013831291.1 | hypothetical protein | - |
| PP1Y_RS00380 () | 21431..22204 | + | 774 | WP_013831293.1 | autoinducer binding domain-containing protein | - |
| PP1Y_RS00385 () | 22299..22925 | + | 627 | WP_013831294.1 | autoinducer synthase | - |
| PP1Y_RS00390 () | 22915..23772 | + | 858 | WP_013831295.1 | phytanoyl-CoA dioxygenase family protein | - |
| PP1Y_RS00395 () | 23769..24368 | + | 600 | WP_013831296.1 | GntR family transcriptional regulator | - |
| PP1Y_RS00400 () | 24653..25585 | + | 933 | WP_013831297.1 | HEPN domain-containing protein | - |
| PP1Y_RS00405 () | 25908..26402 | + | 495 | WP_148274769.1 | sigma-70 family RNA polymerase sigma factor | - |
| PP1Y_RS00410 () | 26465..27409 | + | 945 | WP_158511810.1 | FecR domain-containing protein | - |
| PP1Y_RS00415 () | 27525..30110 | + | 2586 | WP_013831300.1 | TonB-dependent receptor | - |
| PP1Y_RS00420 () | 30263..32260 | + | 1998 | WP_158511811.1 | Atxe2 family lasso peptide isopeptidase | - |
| PP1Y_RS00425 () | 32315..34069 | - | 1755 | WP_013831302.1 | asparagine synthase | - |
| PP1Y_RS00430 () | 34066..34680 | - | 615 | WP_041557994.1 | lasso peptide biosynthesis B2 protein | - |
| PP1Y_RS25615 () | 34785..34922 | - | 138 | WP_158511812.1 | benenodin family lasso peptide | - |
| PP1Y_RS00435 () | 35217..35444 | - | 228 | WP_013831305.1 | DUF2274 domain-containing protein | - |
| PP1Y_RS00440 () | 35441..36781 | - | 1341 | WP_013831306.1 | TrbI/VirB10 family protein | - |
| PP1Y_RS00445 () | 36778..37794 | - | 1017 | WP_013831307.1 | P-type conjugative transfer protein TrbG | - |
| PP1Y_RS00450 () | 37791..38474 | - | 684 | WP_013831308.1 | conjugal transfer protein TrbF | - |
| PP1Y_RS00455 () | 38478..39761 | - | 1284 | WP_041557996.1 | P-type conjugative transfer protein TrbL | - |
| PP1Y_RS24945 () | 39758..40015 | - | 258 | WP_158511813.1 | putative entry exclusion protein TrbK-alt | - |
| PP1Y_RS00460 () | 40017..40739 | - | 723 | WP_013831310.1 | P-type conjugative transfer protein TrbJ | - |
| PP1Y_RS00465 () | 40746..43172 | - | 2427 | WP_041558087.1 | conjugal transfer protein TrbE | - |
| PP1Y_RS00470 () | 43169..43441 | - | 273 | WP_013831312.1 | VirB3 family type IV secretion system protein | - |
| PP1Y_RS00475 () | 43441..43773 | - | 333 | WP_013831313.1 | TrbC/VirB2 family protein | - |
| PP1Y_RS00480 () | 43770..44756 | - | 987 | WP_013831314.1 | P-type conjugative transfer ATPase TrbB | - |
| PP1Y_RS24955 () | 45360..45659 | - | 300 | Protein_47 | recombinase family protein | - |
| PP1Y_RS00490 () | 45786..46403 | - | 618 | WP_013831315.1 | sterol desaturase family protein | - |
| PP1Y_RS24960 () | 46597..46986 | - | 390 | Protein_49 | 2-dehydro-3-deoxyphosphooctonate aldolase | - |
| PP1Y_RS00505 () | 47020..48056 | + | 1037 | Protein_50 | IS3 family transposase | - |
| PP1Y_RS00510 () | 48080..50143 | - | 2064 | WP_013831319.1 | recombinase family protein | - |
| PP1Y_RS24965 () | 50676..50813 | + | 138 | Protein_52 | integrase catalytic subunit | - |
| PP1Y_RS00520 () | 51014..52048 | + | 1035 | WP_013831322.1 | GDP-mannose 4,6-dehydratase | - |
| PP1Y_RS00525 () | 52145..53041 | + | 897 | WP_041558003.1 | GDP-mannose 4,6-dehydratase | - |
| PP1Y_RS00530 () | 53248..54430 | - | 1183 | Protein_55 | IS256 family transposase | - |
| PP1Y_RS00535 () | 54761..55210 | + | 450 | WP_148274757.1 | hypothetical protein | - |
| PP1Y_RS00540 () | 55210..58983 | + | 3774 | WP_013831328.1 | glycosyltransferase | - |
| PP1Y_RS24970 () | 59037..59906 | - | 870 | WP_148274758.1 | right-handed parallel beta-helix repeat-containing protein | - |
| PP1Y_RS00550 () | 60326..61513 | - | 1188 | WP_013831330.1 | glycosyltransferase family 4 protein | - |
| PP1Y_RS00555 () | 61510..62712 | - | 1203 | WP_041558010.1 | glycosyltransferase family 4 protein | - |
| PP1Y_RS00560 () | 62709..64442 | - | 1734 | WP_148274759.1 | glycosyltransferase family 4 protein | - |
| PP1Y_RS00565 () | 64467..65138 | - | 672 | WP_013831334.1 | ABC transporter ATP-binding protein | - |
| PP1Y_RS00570 () | 65135..65932 | - | 798 | WP_013831335.1 | ABC transporter permease | - |
| PP1Y_RS00575 () | 65943..67052 | - | 1110 | WP_013831336.1 | sugar ABC transporter permease | - |
| PP1Y_RS00580 () | 67371..68558 | + | 1188 | WP_013831337.1 | polysaccharide export protein | - |
| PP1Y_RS00585 () | 68595..69878 | + | 1284 | WP_051009903.1 | glycosyltransferase | - |
| PP1Y_RS00590 () | 69916..71394 | - | 1479 | WP_013831339.1 | phosphomannomutase | - |
| PP1Y_RS00595 () | 71403..72485 | - | 1083 | WP_013831340.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| PP1Y_RS00600 () | 72677..72955 | + | 279 | Protein_69 | transposase | - |
| PP1Y_RS24980 () | 73115..73342 | + | 228 | WP_013831343.1 | hypothetical protein | - |
| PP1Y_RS00605 () | 73342..74724 | + | 1383 | WP_013831344.1 | hypothetical protein | - |
| PP1Y_RS00610 () | 74728..76287 | + | 1560 | WP_013831345.1 | sulfatase-like hydrolase/transferase | - |
| PP1Y_RS00615 () | 76665..76946 | + | 282 | WP_013831347.1 | hypothetical protein | - |
| PP1Y_RS00620 () | 77431..78159 | - | 729 | WP_013831348.1 | IS21-like element ISSsp4 family helper ATPase IstB | - |
| PP1Y_RS00625 () | 78146..79660 | - | 1515 | WP_013831349.1 | IS21 family transposase | - |
| PP1Y_RS00630 () | 80244..81497 | + | 1254 | WP_041558016.1 | neprosin family prolyl endopeptidase | - |
| PP1Y_RS00635 () | 81516..85001 | + | 3486 | WP_041558018.1 | hypothetical protein | - |
| PP1Y_RS24520 () | 85086..86261 | + | 1176 | WP_148274770.1 | hypothetical protein | - |
| PP1Y_RS00645 () | 86441..87634 | + | 1194 | WP_013831353.1 | AAA family ATPase | - |
| PP1Y_RS00650 () | 87744..88817 | + | 1074 | WP_013831354.1 | ParB/RepB/Spo0J family partition protein | - |
| PP1Y_RS00655 () | 88922..90199 | + | 1278 | WP_013831355.1 | replication initiator protein A | - |
| PP1Y_RS00660 () | 90891..92156 | - | 1266 | WP_013831356.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| PP1Y_RS00665 () | 92146..92382 | - | 237 | WP_013831357.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| PP1Y_RS00670 () | 92999..94036 | + | 1038 | WP_013831359.1 | tyrosine-type recombinase/integrase | - |
| PP1Y_RS00675 () | 94070..94312 | + | 243 | WP_041558020.1 | hypothetical protein | - |
| PP1Y_RS00680 () | 94325..94750 | + | 426 | WP_013831360.1 | hypothetical protein | - |
| PP1Y_RS00685 () | 94799..96049 | - | 1251 | WP_013831361.1 | HipA domain-containing protein | - |
| PP1Y_RS00690 () | 96056..96397 | - | 342 | WP_013831362.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS00700 () | 96532..96852 | - | 321 | WP_041558022.1 | hypothetical protein | - |
| PP1Y_RS00705 () | 96960..98231 | + | 1272 | WP_013831363.1 | hypothetical protein | - |
| PP1Y_RS00710 () | 98228..99052 | - | 825 | Protein_91 | transposase | - |
| PP1Y_RS00715 () | 99372..99731 | + | 360 | WP_041558024.1 | hypothetical protein | - |
| PP1Y_RS00720 () | 99731..100468 | + | 738 | WP_051009904.1 | hypothetical protein | - |
| PP1Y_RS00725 () | 100465..104943 | + | 4479 | WP_013831367.1 | UDP-forming cellulose synthase catalytic subunit | - |
| PP1Y_RS00730 () | 105036..108416 | + | 3381 | WP_051009909.1 | cellulose biosynthesis protein BcsC | - |
| PP1Y_RS00735 () | 108413..108880 | + | 468 | WP_041558026.1 | hypothetical protein | - |
| PP1Y_RS00740 () | 108870..109871 | + | 1002 | WP_013831370.1 | endoglucanase | - |
| PP1Y_RS24995 () | 109893..110453 | - | 561 | Protein_98 | HipA N-terminal domain-containing protein | - |
| PP1Y_RS00750 () | 110446..110799 | - | 354 | WP_041558030.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS25930 () | 111950..112354 | - | 405 | WP_158511814.1 | hypothetical protein | - |
| PP1Y_RS00755 () | 112353..114629 | + | 2277 | WP_013831376.1 | FdhF/YdeP family oxidoreductase | - |
| PP1Y_RS25630 () | 114662..114907 | - | 246 | WP_041558032.1 | hypothetical protein | - |
| PP1Y_RS25935 () | 115875..116633 | + | 759 | WP_013831380.1 | nucleoside diphosphate kinase regulator | - |
| PP1Y_RS00770 () | 117011..117562 | - | 552 | WP_013831382.1 | hypothetical protein | - |
| PP1Y_RS00775 () | 117617..117895 | - | 279 | WP_041558033.1 | hypothetical protein | - |
| PP1Y_RS00780 () | 118265..118616 | + | 352 | Protein_106 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PP1Y_RS00785 () | 118634..118924 | + | 291 | WP_013831384.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS00790 () | 119185..120072 | + | 888 | WP_013831385.1 | hypothetical protein | - |
| PP1Y_RS25640 () | 120036..121832 | - | 1797 | WP_041558035.1 | hypothetical protein | - |
| PP1Y_RS00800 () | 122106..122387 | + | 282 | WP_013831390.1 | plasmid maintenance system killer | - |
| PP1Y_RS00805 () | 122495..124021 | + | 1527 | WP_013831391.1 | IS21 family transposase | - |
| PP1Y_RS00810 () | 124011..124790 | + | 780 | WP_013831392.1 | IS21-like element helper ATPase IstB | - |
| PP1Y_RS25045 () | 124910..125179 | - | 270 | WP_013831393.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PP1Y_RS00815 () | 125243..125719 | + | 477 | WP_013831394.1 | Hsp20 family protein | - |
| PP1Y_RS00825 () | 126425..126844 | + | 420 | WP_148274761.1 | SPW repeat protein | - |
| PP1Y_RS00830 () | 127296..127727 | - | 432 | WP_013831397.1 | phasin family protein | - |
| PP1Y_RS00835 () | 127897..128619 | - | 723 | WP_013831398.1 | acetoacetyl-CoA reductase | - |
| PP1Y_RS00845 () | 129742..130095 | - | 354 | WP_013831400.1 | PilZ domain-containing protein | - |
| PP1Y_RS00850 () | 130458..130823 | - | 366 | WP_013831402.1 | PilZ domain-containing protein | - |
| PP1Y_RS00855 () | 131669..132331 | + | 663 | WP_013831404.1 | YqcI/YcgG family protein | - |
| PP1Y_RS00860 () | 132328..132918 | + | 591 | WP_013831405.1 | urea carboxylase-associated family protein | - |
| PP1Y_RS00865 () | 133219..134124 | - | 906 | WP_148274762.1 | hypothetical protein | - |
| PP1Y_RS00870 () | 134585..135187 | + | 603 | WP_013831408.1 | helix-turn-helix transcriptional regulator | - |
| PP1Y_RS00875 () | 135184..136398 | + | 1215 | WP_013831409.1 | HipA domain-containing protein | - |
| PP1Y_RS00880 () | 136653..137099 | + | 447 | WP_013831410.1 | carboxymuconolactone decarboxylase family protein | - |
| PP1Y_RS00885 () | 137354..137785 | - | 432 | Protein_126 | RNA polymerase sigma factor SigJ | - |
| PP1Y_RS00890 () | 137827..137961 | - | 135 | Protein_127 | IS3 family transposase | - |
| PP1Y_RS00895 () | 138040..139254 | - | 1215 | WP_013831413.1 | DUF1624 domain-containing protein | - |
| PP1Y_RS25070 () | 139676..139921 | - | 246 | Protein_129 | IS110 family transposase | - |
| PP1Y_RS00900 () | 139919..140140 | + | 222 | Protein_130 | carboxymuconolactone decarboxylase family protein | - |
| PP1Y_RS00905 () | 140395..141270 | - | 876 | WP_041558048.1 | sigma-70 family RNA polymerase sigma factor | - |
| PP1Y_RS00910 () | 141260..141898 | - | 639 | WP_013831417.1 | NAD(P)H-dependent oxidoreductase | - |
| PP1Y_RS00915 () | 141915..142394 | - | 480 | WP_013831418.1 | carboxymuconolactone decarboxylase family protein | - |
| PP1Y_RS00920 () | 143154..143642 | - | 489 | WP_013831421.1 | hypothetical protein | - |
| PP1Y_RS25075 () | 143895..144140 | + | 246 | WP_013831422.1 | hypothetical protein | - |
| PP1Y_RS00935 () | 144798..146924 | + | 2127 | WP_051009905.1 | TonB-dependent siderophore receptor | - |
| PP1Y_RS00940 () | 146930..148411 | + | 1482 | WP_013831425.1 | PepSY domain-containing protein | - |
| PP1Y_RS00945 () | 148885..149640 | - | 756 | WP_013831426.1 | hypothetical protein | - |
| PP1Y_RS00950 () | 149634..150647 | - | 1014 | WP_013831427.1 | hypothetical protein | - |
| PP1Y_RS00955 () | 150916..152514 | - | 1599 | WP_041558053.1 | hypothetical protein | - |
| PP1Y_RS00960 () | 152972..154876 | + | 1905 | WP_013831430.1 | potassium transporter Kup | - |
| PP1Y_RS00965 () | 154902..156347 | + | 1446 | WP_013831431.1 | DUF4118 domain-containing protein | - |
| PP1Y_RS00970 () | 156344..157024 | + | 681 | WP_013831432.1 | response regulator transcription factor | - |
| PP1Y_RS00975 () | 157280..159247 | + | 1968 | WP_158511815.1 | VWA domain-containing protein | - |
| PP1Y_RS00980 () | 159259..159885 | + | 627 | WP_013831435.1 | pilus assembly protein | - |
| PP1Y_RS00985 () | 159885..160535 | + | 651 | WP_013831436.1 | hypothetical protein | - |
| PP1Y_RS25090 () | 160591..160950 | + | 360 | WP_148274764.1 | hypothetical protein | - |
| PP1Y_RS01000 () | 161547..161792 | + | 246 | WP_013831438.1 | BrnT family toxin | Toxin Detail |
| PP1Y_RS01005 () | 161789..162076 | + | 288 | WP_013831439.1 | BrnA antitoxin family protein | Antitoxin Detail |
| PP1Y_RS01010 () | 162449..163303 | - | 855 | WP_041558059.1 | hypothetical protein | - |
| PP1Y_RS01015 () | 163303..164946 | - | 1644 | WP_013831441.1 | ATP-binding protein | - |
| PP1Y_RS01020 () | 165522..166766 | - | 1245 | WP_013831442.1 | hypothetical protein | - |
| PP1Y_RS25095 () | 167142..167444 | - | 303 | WP_007014466.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PP1Y_RS01025 () | 167447..167692 | - | 246 | WP_013831443.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| PP1Y_RS01030 () | 167865..168497 | + | 633 | WP_013831444.1 | tyrosine-type recombinase/integrase | - |
| PP1Y_RS01035 () | 168711..169595 | - | 885 | WP_013831446.1 | LysR family transcriptional regulator | - |
| PP1Y_RS01040 () | 169710..171266 | + | 1557 | WP_013831447.1 | sulfatase-like hydrolase/transferase | - |
| PP1Y_RS01045 () | 171659..172072 | - | 414 | WP_041558067.1 | hypothetical protein | - |
| PP1Y_RS25645 () | 172186..173103 | - | 918 | WP_148274766.1 | hypothetical protein | - |
| PP1Y_RS01055 () | 173113..175536 | - | 2424 | WP_013831450.1 | hypothetical protein | - |
| PP1Y_RS01060 () | 175788..176591 | - | 804 | WP_013831451.1 | molecular chaperone | - |
| PP1Y_RS01065 () | 176688..177449 | - | 762 | WP_148274767.1 | hypothetical protein | - |
| PP1Y_RS01070 () | 177592..178116 | - | 525 | WP_013831453.1 | hypothetical protein | - |
| PP1Y_RS01075 () | 179376..180068 | - | 693 | WP_041558071.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS01080 () | 180436..181524 | - | 1089 | WP_013831456.1 | PepSY domain-containing protein | - |
| PP1Y_RS01085 () | 181538..183706 | - | 2169 | WP_013831457.1 | TonB-dependent receptor | - |
| PP1Y_RS01090 () | 183912..184166 | + | 255 | WP_013831458.1 | antitoxin | - |
| PP1Y_RS01095 () | 184163..184474 | + | 312 | Protein_168 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PP1Y_RS01100 () | 184754..185233 | + | 480 | Protein_169 | hypothetical protein | - |
| PP1Y_RS01105 () | 185359..186327 | + | 969 | WP_013831460.1 | DUF1738 domain-containing protein | - |
| PP1Y_RS25110 () | 186262..186597 | - | 336 | WP_079731798.1 | hypothetical protein | - |
| PP1Y_RS01110 () | 186594..188726 | - | 2133 | WP_013831461.1 | hypothetical protein | - |
| PP1Y_RS01115 () | 188723..190510 | - | 1788 | WP_013831462.1 | hypothetical protein | - |
| PP1Y_RS01120 () | 190507..191958 | - | 1452 | WP_038577292.1 | site-specific integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|